Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 2306.2 1197 100.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 2062.7 1210 89.1
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 2054.3 1208 88.9
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 2010.3 1411 77.9
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1615.5 1204 71.4
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1594.3 1224 69.3
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1591.2 1248 67.8
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1572.4 1214 69.4
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1570.1 1218 68.8
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1565.4 1250 67.7
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1565.4 1215 69.5
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1559.3 1208 67.4
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1558.9 1213 68.6
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1557.7 1205 69.4
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1552.0 1220 68.1
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1551.6 1214 68.2
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1550.0 1151 70.5
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1548.9 1159 70.2
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1545.8 1224 67.0
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1545.4 1225 66.4
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1545.4 1220 68.0
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1543.5 1224 67.2
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1541.9 1224 67.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1540.0 1219 69.3
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1537.3 1203 68.4
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1532.7 1146 70.4
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1525.4 1205 68.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1524.2 1148 69.4
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1523.1 1226 65.8
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1521.5 1225 66.7
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1521.1 1225 65.6
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1514.2 1225 65.5
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1213 67.1
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1502.3 1210 67.2
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1496.9 1195 66.7
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1494.9 1218 67.3
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1494.6 1197 67.0
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1492.6 1152 67.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1492.2 1216 66.0
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1491.5 1216 66.7
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1486.1 1214 66.5
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1484.9 1195 67.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1469.9 1227 65.2
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1466.4 1219 65.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1203 65.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1459.9 1200 65.8
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1456.4 1201 65.6
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1455.7 1204 65.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1448.7 1205 64.5
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1445.6 1197 65.2
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1444.5 1199 65.4
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1443.3 1196 65.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1442.2 1197 65.1
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1441.8 1222 64.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1441.8 1222 64.4
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1441.0 1192 65.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1439.9 1201 65.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1201 65.0
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1223 64.0
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1429.5 1215 64.1
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1204 65.2
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1197 65.1
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1419.4 1210 63.3
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1418.3 1206 63.0
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1417.1 1352 59.3
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1416.4 1208 63.2
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1246 63.0
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1232 63.6
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1246 63.0
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1411.0 1209 62.7
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1409.0 1246 62.9
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1409.0 1223 62.6
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1407.9 1221 62.6
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1406.3 1197 64.0
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1400.6 1223 62.7
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1399.8 1197 63.2
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1398.3 1182 64.7
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1374.4 1199 63.4
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1369.8 1224 61.4
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1363.6 1210 61.8
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1360.1 1184 62.5
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1356.3 1185 63.5
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1355.1 1141 64.5
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1341.6 1197 62.7
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1341.6 1240 60.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1334.3 1187 62.7
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1332.4 1157 62.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1328.2 1230 61.1
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1326.6 1240 60.8
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1316.6 1146 62.9
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1290.4 1151 62.3
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1216.4 1190 57.2
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1204.9 1023 63.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1172.9 1060 61.4
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1154.0 1181 56.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1151.7 1177 56.1
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1144.0 1073 58.3
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1129.4 1214 54.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1126.3 1121 55.3
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1124.0 822 71.9
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1120.5 979 63.2
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.9e-303 1046.2 1171 53.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 6.9e-301 1037.7 1159 52.0
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 2.4e-285 986.1 1238 49.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 7.6e-284 981.1 787 67.3
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.0e-283 980.7 1128 49.8
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.6e-265 918.7 745 64.3
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 7.9e-265 917.9 677 70.2
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 1.6e-252 877.1 946 52.0
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 5.9e-244 848.6 1254 42.8
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-241 840.1 662 65.4
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 6.1e-225 785.4 1253 41.1
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.9e-222 776.5 635 65.2
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.6e-218 762.3 703 61.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.0e-215 753.8 661 61.3
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.2e-201 708.0 1156 41.0
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.8e-200 704.1 584 65.8
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 1.8e-200 704.1 613 62.3
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 2.0e-199 700.7 676 58.0
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.9e-182 642.9 580 59.7
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.7e-180 637.1 1139 37.9
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.3e-163 580.9 520 60.8
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.4e-154 549.3 455 64.6
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.8e-153 546.6 454 64.8
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 4.1e-144 516.9 429 64.8
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.2e-140 505.4 1517 29.6
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 7.0e-136 489.6 385 70.4
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 2.5e-133 481.1 402 67.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.1e-104 386.0 302 67.9
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 2.6e-98 364.8 484 49.6
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 3.7e-97 360.9 364 59.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.2e-96 357.8 276 67.8
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-94 352.1 421 48.7
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.8e-87 326.6 399 50.6
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.3e-85 320.9 246 68.7
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-73 282.3 402 45.0
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.2e-71 276.2 262 56.9
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.1e-67 261.5 239 59.0
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.3e-60 239.6 201 63.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.4e-53 213.8 210 54.8
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.8e-52 211.1 208 54.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.4e-51 208.8 179 59.8
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-51 208.0 208 53.8
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-50 206.5 205 54.6
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 5.8e-50 204.1 130 80.0
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-46 193.0 172 61.6
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.1e-46 191.0 168 60.1
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.5e-40 171.0 134 59.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-39 168.3 130 60.8
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 5.1e-38 164.5 130 60.0
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.5e-37 162.9 127 59.8
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.3e-36 159.8 168 55.4
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-35 154.5 134 66.4
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-28 132.5 111 56.8
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 2.2e-28 132.5 103 60.2
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-26 125.9 94 66.0
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.3e-25 123.2 99 71.7
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.2e-24 118.6 99 71.7
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.3e-22 112.5 222 36.5
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 3.3e-21 108.6 172 42.4
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.8e-19 102.8 64 79.7
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 6.1e-15 87.8 71 69.0
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 8.0e-15 87.4 100 57.0
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.3e-14 85.9 62 74.2
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 6.7e-14 84.3 70 62.9
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 4.1e-11 75.1 79 65.8
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 5.3e-11 74.7 121 38.0
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.6e-10 73.2 192 29.7
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 1.6e-10 73.2 65 70.8
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 3.5e-10 72.0 72 63.9
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 5.9e-10 71.2 65 69.2
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 5.9e-10 71.2 65 69.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 5.9e-10 71.2 127 39.4
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 2.2e-09 69.3 64 68.8
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-08 67.0 147 41.5
TAR636G1681 Trochodendron aralioides HOM05D000172 ORTHO05D000273 4.7e-07 61.6 51 68.6
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.8e-06 59.7 72 45.8


User provided reference genes

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