Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 5.8e-239 830.5 418 100.0
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 2.8e-217 758.4 416 90.6
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 6.5e-198 694.1 456 79.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 8.8e-187 657.1 432 75.0
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.2e-186 656.8 432 75.5
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.5e-186 656.4 427 75.6
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 4.4e-186 654.8 425 76.0
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.4e-186 654.8 425 76.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 4.8e-185 651.4 428 75.2
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 5.3e-184 647.9 416 77.4
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.7e-183 645.6 427 75.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 5.9e-183 644.4 400 78.0
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 7.7e-183 644.0 426 74.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.3e-182 643.3 411 76.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.8e-182 641.7 401 77.6
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.0e-182 641.3 405 76.5
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.0e-182 641.3 411 76.2
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 6.5e-182 641.0 417 76.5
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.1e-181 640.2 427 74.0
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.1e-181 640.2 428 74.5
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.5e-181 639.8 428 74.5
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.5e-181 639.0 428 74.5
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 7.2e-181 637.5 425 74.6
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 7.2e-181 637.5 404 76.5
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.2e-180 636.7 411 74.9
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 2.1e-180 636.0 407 76.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 6.1e-180 634.4 413 74.3
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.4e-179 633.3 408 76.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.8e-179 632.9 429 74.4
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 5.2e-179 631.3 416 74.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 8.8e-179 630.6 404 75.0
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.6e-178 629.0 410 74.4
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.7e-177 626.3 400 75.2
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.7e-177 625.2 426 73.7
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 8.3e-177 624.0 400 74.2
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-176 623.2 421 73.4
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.4e-176 623.2 417 74.8
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.8e-176 622.9 423 73.5
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.1e-176 622.1 421 73.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.4e-176 621.3 424 72.9
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.0e-176 620.9 431 72.2
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 9.1e-176 620.5 400 75.8
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.0e-175 619.4 408 74.5
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.0e-175 619.4 408 74.5
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 4.5e-175 618.2 442 70.6
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.0e-174 617.1 435 70.3
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.3e-174 616.7 427 71.2
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.3e-174 616.7 410 75.4
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.3e-174 616.7 392 75.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.7e-174 616.3 413 71.9
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 3.8e-174 615.1 403 73.0
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 5.0e-174 614.8 413 72.2
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.5e-173 612.5 392 75.5
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 5.5e-173 611.3 408 73.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 7.2e-173 610.9 463 66.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.2e-172 610.1 398 73.4
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.6e-172 609.8 418 71.3
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.0e-171 607.1 404 73.8
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.4e-171 606.7 445 70.1
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 2.3e-171 605.9 392 75.3
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 6.8e-171 604.4 396 75.3
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 8.8e-171 604.0 388 76.3
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 5.7e-170 601.3 429 69.2
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 9.8e-170 600.5 393 73.5
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.8e-169 599.0 423 69.3
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.7e-169 598.6 423 69.7
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 6.3e-169 597.8 422 69.4
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 8.3e-169 597.4 396 74.5
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.4e-168 596.7 452 69.5
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 2.4e-168 595.9 397 71.8
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 4.1e-168 595.1 392 73.5
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.0e-168 594.3 413 70.5
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.2e-167 593.6 422 68.5
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.2e-167 593.6 400 71.5
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 2.7e-167 592.4 374 78.3
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.9e-165 586.3 383 72.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 9.5e-165 583.9 393 72.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 4.0e-163 578.6 422 67.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.2e-163 578.2 422 67.8
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 5.2e-163 578.2 400 70.5
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 5.2e-163 578.2 400 70.5
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 4.1e-160 568.5 385 73.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.0e-159 566.2 432 66.4
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.3e-158 562.8 387 70.0
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 8.6e-158 560.8 419 67.8
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.9e-157 559.7 562 54.8
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 7.3e-157 557.8 391 71.9
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-155 553.9 412 64.6
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 6.8e-155 551.2 367 73.8
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.4e-154 548.9 424 66.7
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 7.8e-151 537.7 382 68.3
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.4e-146 522.3 331 76.7
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.4e-144 516.9 394 67.0
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.0e-142 510.8 339 72.3
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 6.6e-142 508.1 411 63.0
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.5e-141 506.1 344 70.6
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 3.3e-141 505.8 373 68.9
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.6e-140 502.3 408 59.3
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 8.1e-140 501.1 393 60.8
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 8.9e-139 497.7 291 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.7e-135 486.1 401 58.9
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 4.6e-135 485.3 378 62.2
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.6e-132 475.7 335 72.2
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 4.9e-129 465.3 418 60.0
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 9.6e-125 451.1 348 67.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.4e-123 447.2 334 66.5
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 4.3e-117 425.6 334 64.4
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 6.9e-115 418.3 369 54.7
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.1e-107 394.4 276 69.6
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.8e-107 393.7 307 66.8
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 8.4e-105 384.8 320 62.5
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.0e-97 361.3 410 46.8
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 5.0e-97 359.0 372 49.2
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.9e-93 347.1 319 54.9
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.8e-92 343.2 228 73.7
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 7.7e-82 308.5 399 42.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-67 260.8 170 69.4
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.9e-64 250.8 129 94.6
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.7e-60 237.7 265 47.5
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 7.2e-56 222.2 240 52.1
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.8e-51 207.6 122 79.5
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.9e-50 202.6 167 62.9
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-47 194.1 167 58.7
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.8e-46 191.0 151 60.9
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.7e-44 184.5 336 31.8
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.1e-32 145.2 140 57.1
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.9e-28 130.6 415 29.2
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 8.3e-28 129.0 84 71.4
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.3e-25 120.9 116 56.9
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.2e-23 115.2 95 61.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.8e-20 103.6 64 70.3
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 6.4e-20 102.8 95 61.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.7e-15 86.7 70 61.4
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.1e-14 84.0 71 56.3
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.5e-13 81.6 49 75.5
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.0e-09 67.4 62 51.6
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.5e-08 64.3 42 69.0
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 9.6e-08 62.4 44 63.6


User provided reference genes

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