Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 2350.9 1167 100.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 2173.7 1161 92.2
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 2136.3 1229 87.1
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1877.1 1175 79.9
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1171 79.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1869.7 1170 79.0
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1867.8 1170 79.0
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1866.7 1159 79.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1866.7 1171 78.3
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1864.4 1171 78.5
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1171 78.3
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1853.6 1168 78.0
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1853.2 1166 78.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1843.6 1171 78.1
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1178 76.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1838.9 1171 77.2
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1833.5 1160 77.9
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1832.8 1157 78.4
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1832.4 1167 76.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1830.8 1178 77.6
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1829.7 1167 76.7
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1827.0 1162 78.0
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1826.2 1162 78.0
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1826.2 1170 76.8
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1826.2 1167 77.1
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1825.4 1162 78.0
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1825.1 1188 75.9
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1824.3 1171 76.6
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1823.1 1162 77.9
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1822.8 1164 76.8
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1822.0 1166 76.5
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1812.3 1170 76.7
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1812.0 1169 76.6
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1808.5 1164 76.5
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1807.3 1157 76.0
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1801.9 1166 76.4
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1800.0 1169 76.0
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1790.4 1185 74.9
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1790.4 1157 76.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1785.4 1168 75.2
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1781.5 1165 75.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1778.8 1154 77.6
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1777.7 1170 75.6
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1766.1 1172 74.3
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1765.7 1172 74.4
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1762.3 1191 73.8
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1761.5 1185 73.8
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1756.1 1431 65.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1755.7 1188 72.9
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1751.1 1169 74.8
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1742.2 1165 74.2
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1738.0 1165 74.1
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1738.0 1162 73.2
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1738.0 1165 73.5
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1736.9 1165 73.8
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1735.3 1161 73.6
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1732.6 1168 72.1
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1732.2 1165 73.7
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1731.5 1165 73.5
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1729.5 1162 72.9
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1724.9 1169 73.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1720.7 1165 73.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1718.7 1170 72.8
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1718.4 1168 73.2
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1714.5 1171 71.6
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1713.0 1162 73.1
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1711.4 1170 72.6
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1710.3 1167 71.8
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1709.1 1165 72.8
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1707.6 1172 72.2
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1707.2 1165 72.5
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1706.8 1166 72.5
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1705.3 1168 73.0
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1704.9 1165 72.5
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1704.1 1166 72.3
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1703.3 1164 72.6
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1703.0 1166 72.1
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1703.0 1167 72.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1701.0 1168 72.5
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1700.3 1166 72.5
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1699.9 1167 72.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1697.6 1172 71.8
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1697.2 1169 72.3
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1696.0 1166 72.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1691.0 1171 72.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1690.6 1166 72.0
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1668.7 1159 72.0
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1649.4 1174 71.4
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1640.6 1069 75.2
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1635.5 1231 67.3
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1610.1 1081 72.9
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1597.8 1159 67.5
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1596.3 998 78.7
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1587.8 1166 68.2
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1547.7 1044 74.4
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1486.9 1139 64.5
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1456.8 945 76.0
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1446.0 1093 68.4
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1444.9 1002 71.8
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1441.0 1161 62.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1381.7 856 79.4
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1369.0 966 71.0
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1342.4 937 71.4
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1283.9 920 69.8
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1265.4 830 75.3
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1255.4 677 91.1
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1203.0 1275 50.0
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1097.8 746 71.2
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1092.8 1264 47.1
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 5.1e-301 1038.1 1162 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.2e-289 1000.3 1161 47.0
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 4.1e-274 948.7 774 62.9
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-263 914.1 592 77.2
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 9.2e-250 867.8 536 79.9
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 4.6e-249 865.5 926 52.7
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.5e-247 859.8 860 55.1
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 2.6e-212 743.4 446 83.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 2.1e-201 707.2 996 41.1
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 9.1e-157 558.9 301 89.0
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 4.5e-156 556.6 489 57.9
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 4.0e-136 490.3 365 66.0
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.7e-118 431.8 316 66.8
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.2e-101 374.4 205 87.8
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.9e-94 351.3 317 59.6
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.2e-92 345.9 372 49.5
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.3e-90 337.8 194 82.0
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 4.9e-86 323.9 255 62.0
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 4.3e-82 310.8 172 86.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.6e-79 301.6 224 66.5
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 7.6e-79 300.1 159 92.5
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-78 299.3 220 66.8
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.8e-67 262.3 151 82.8
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-58 233.0 162 71.6
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.0e-51 209.9 138 72.5
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.2e-44 186.4 152 63.2
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.0e-43 183.3 202 48.0
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 5.2e-43 181.0 186 51.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 5.2e-43 181.0 186 51.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 5.2e-43 181.0 186 51.1
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.6e-42 178.7 149 58.4
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 7.5e-42 177.2 121 71.9
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 4.1e-40 171.4 102 83.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.2e-39 169.9 176 53.4
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.6e-39 169.5 111 74.8
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.5e-39 168.3 98 80.6
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 7.2e-37 160.6 98 83.7
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.7e-33 149.4 108 72.2
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.0e-32 144.1 87 74.7
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.0e-31 142.5 80 78.8
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 6.8e-27 127.5 124 54.8
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 6.8e-27 127.5 87 66.7
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.7e-25 122.9 87 65.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 6.3e-25 120.9 65 84.6
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 2.3e-22 112.5 823 22.5
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 2.3e-22 112.5 107 48.6
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 5.6e-21 107.8 102 57.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 6.1e-20 104.4 62 80.6
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 3.2e-16 92.0 83 50.6
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.2e-15 90.1 57 70.2
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 6.0e-15 87.8 81 56.8
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 7.8e-15 87.4 52 76.9
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-14 86.3 58 69.0
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 5.0e-14 84.7 57 64.9
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.3e-13 80.9 56 64.3
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.1e-11 77.0 400 22.2
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-11 77.0 99 45.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.4e-11 76.6 69 49.3
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.3e-11 75.9 45 77.8
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 7.0e-08 64.3 52 63.5
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.3e-06 59.3 40 70.0


User provided reference genes

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