Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.2e-175 619.8 316 100.0
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.0e-150 537.0 310 89.0
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.0e-147 526.9 310 87.4
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.8e-128 463.0 277 83.8
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 5.0e-126 454.9 263 85.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.1e-125 453.8 307 76.5
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.8e-123 446.4 300 75.7
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.8e-123 446.4 300 75.7
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 5.2e-123 444.9 275 81.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.0e-122 443.0 311 74.3
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.6e-122 442.6 276 82.6
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.7e-122 441.4 311 72.3
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.7e-121 439.9 301 74.8
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.7e-121 439.9 319 72.1
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.2e-121 439.5 283 79.9
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.7e-121 438.7 300 75.7
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 4.9e-121 438.3 275 78.9
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 6.3e-121 438.0 272 82.4
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 6.3e-121 438.0 311 73.6
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 6.3e-121 438.0 309 72.2
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.1e-120 437.2 273 79.9
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.2e-120 435.6 281 77.6
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 4.1e-120 435.3 303 73.6
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 4.1e-120 435.3 303 73.6
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 5.4e-120 434.9 315 71.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 7.0e-120 434.5 306 74.8
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 9.2e-120 434.1 299 74.9
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 9.2e-120 434.1 268 81.0
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.6e-119 433.3 294 78.6
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 2.0e-119 433.0 303 74.9
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.7e-119 432.6 262 80.9
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.7e-119 432.6 303 73.6
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.7e-119 432.6 263 82.5
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 3.5e-119 432.2 272 79.0
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 3.5e-119 432.2 264 83.0
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 4.5e-119 431.8 272 79.0
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 5.9e-119 431.4 305 71.5
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 5.9e-119 431.4 272 78.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 7.8e-119 431.0 281 77.9
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.0e-118 430.6 282 77.7
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.0e-118 430.6 282 77.7
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.3e-118 430.3 266 79.7
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.3e-118 430.3 275 77.5
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.3e-118 430.3 295 74.6
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.7e-118 429.9 275 77.5
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.7e-118 429.9 261 81.6
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 2.9e-118 429.1 307 71.7
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.9e-118 429.1 309 74.1
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 3.9e-118 428.7 268 80.6
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.9e-118 428.7 261 81.6
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 3.9e-118 428.7 294 75.2
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 5.0e-118 428.3 259 81.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.6e-118 427.9 272 77.9
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 6.6e-118 427.9 300 72.7
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 8.6e-118 427.6 268 79.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 8.6e-118 427.6 273 79.5
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.5e-117 426.8 261 80.8
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 1.9e-117 426.4 261 81.2
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.3e-117 425.6 275 76.7
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.3e-117 425.6 275 76.7
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.3e-117 425.6 300 73.7
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 5.6e-117 424.9 268 79.1
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 7.3e-117 424.5 280 77.5
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.2e-116 423.7 268 78.7
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.2e-116 423.7 274 78.1
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.6e-116 423.3 262 79.8
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.1e-116 422.9 280 76.8
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 3.6e-116 422.2 271 77.5
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 4.7e-116 421.8 307 70.7
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.7e-116 421.8 262 79.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.1e-116 421.4 261 80.1
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.0e-115 420.6 300 73.0
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.0e-115 420.6 285 75.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-115 420.2 269 77.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 4.0e-115 418.7 295 72.2
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 5.2e-115 418.3 268 76.5
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 6.8e-115 417.9 309 70.9
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.8e-115 417.9 317 68.8
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.8e-115 417.9 333 65.8
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.2e-114 417.2 269 78.1
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.4e-114 415.2 296 71.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 5.8e-114 414.8 262 77.5
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.4e-113 411.4 296 70.6
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.3e-113 411.0 296 70.9
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 3.2e-112 409.1 255 83.5
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.2e-111 407.1 309 67.6
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.2e-111 407.1 262 77.9
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.2e-111 407.1 247 82.2
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.3e-110 402.9 271 73.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.9e-110 402.1 313 69.3
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 4.3e-109 398.7 273 75.5
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 3.6e-108 395.6 266 74.4
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.3e-107 392.9 264 74.6
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.5e-106 390.2 282 69.5
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.3e-105 387.1 247 78.1
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-104 384.0 251 78.1
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.7e-102 376.7 259 74.9
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.3e-102 376.3 292 67.1
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 6.6e-102 374.8 227 80.6
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-101 373.6 377 56.0
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.3e-101 372.5 278 68.0
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 4.3e-101 372.1 256 74.2
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.6e-100 370.2 270 68.9
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.8e-99 366.7 300 65.3
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.8e-99 366.7 233 78.5
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.3e-99 366.3 249 75.9
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 7.6e-98 361.3 263 68.8
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.5e-95 352.4 262 68.3
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 6.6e-94 348.2 284 67.6
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 8.6e-94 347.8 261 67.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.3e-93 345.9 281 64.1
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 7.3e-93 344.7 260 70.0
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 5.8e-90 335.1 250 70.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.9e-89 332.8 264 67.0
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.7e-86 323.6 236 72.5
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.1e-85 320.9 262 60.3
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 3.3e-85 319.3 262 64.1
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.8e-84 316.2 286 56.6
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 5.3e-83 312.0 174 89.1
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 5.3e-83 312.0 311 57.9
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.7e-81 307.0 250 67.6
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.6e-79 298.9 238 66.8
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.3e-78 297.4 173 86.1
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.3e-78 296.6 185 84.3
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.1e-77 294.3 271 60.1
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.9e-70 269.2 207 66.7
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.4e-69 265.0 183 71.0
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 4.6e-63 245.7 170 74.1
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.0e-62 244.6 149 78.5
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.3e-62 244.2 181 72.9
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.7e-60 236.1 140 83.6
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.5e-58 229.2 260 47.3
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 9.7e-53 211.5 168 67.3
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.4e-50 203.0 124 80.6
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 4.5e-50 202.6 116 85.3
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 4.5e-50 202.6 116 85.3
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.2e-49 200.3 144 70.8
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.0e-49 199.1 118 82.2
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.2e-41 173.7 113 76.1
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.2e-41 173.7 108 80.6
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.8e-36 156.8 142 57.7
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.4e-35 154.5 110 69.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.5e-34 151.0 125 55.2
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.9e-33 146.7 132 60.6
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.9e-33 146.7 261 36.0
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.5e-32 144.4 97 73.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.5e-32 144.4 116 62.9
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.2e-32 142.9 157 49.7
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.5e-29 134.4 191 42.4
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.3e-28 131.3 85 74.1
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 5.0e-25 119.4 72 83.3
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.8e-22 110.9 73 71.2
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 4.0e-22 109.8 72 75.0
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 2.6e-21 107.1 70 78.6
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.1e-19 98.6 69 68.1
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.9e-16 90.9 54 79.6
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.9e-16 90.9 54 79.6
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.5e-16 90.5 192 36.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.8e-14 82.4 69 62.3
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 6.3e-12 75.9 47 74.5
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 4.2e-08 63.2 243 25.1
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 8.0e-07 58.9 34 73.5


User provided reference genes

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