Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 9.8e-116 420.2 211 100.0
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.6e-86 322.0 211 81.0
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 4.0e-85 318.5 206 80.6
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 5.8e-84 314.7 212 78.3
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 5.1e-72 275.0 182 74.7
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.2e-70 270.4 177 74.6
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 3.6e-70 268.9 196 70.4
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.7e-70 268.5 212 66.5
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 2.4e-69 266.2 186 71.5
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 4.0e-69 265.4 181 70.7
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.2e-69 265.0 185 70.3
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 6.8e-69 264.6 186 73.1
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 8.9e-69 264.2 183 72.7
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 8.9e-69 264.2 204 64.7
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-68 263.8 182 70.3
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-68 263.8 182 70.3
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.5e-68 263.5 182 71.4
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 2.0e-68 263.1 197 68.5
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 2.6e-68 262.7 183 72.7
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 5.8e-68 261.5 183 71.6
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 7.6e-68 261.2 204 63.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.3e-67 260.4 183 70.5
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.3e-67 260.4 196 67.9
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.7e-67 260.0 183 71.0
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.9e-67 259.2 198 67.2
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 2.9e-67 259.2 178 69.1
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 2.9e-67 259.2 185 68.1
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.8e-67 258.8 182 68.7
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 4.9e-67 258.5 178 71.3
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.9e-67 258.5 182 69.2
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.9e-67 258.5 182 69.2
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 6.4e-67 258.1 212 63.7
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.9e-66 256.5 186 68.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.9e-66 256.5 183 69.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 2.4e-66 256.1 175 71.4
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.2e-66 255.8 183 69.4
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.2e-66 255.4 182 69.2
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 4.2e-66 255.4 190 67.4
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 5.4e-66 255.0 185 67.6
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 5.4e-66 255.0 186 68.8
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 7.1e-66 254.6 189 67.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 7.1e-66 254.6 198 66.2
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.1e-66 254.6 184 69.6
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 9.3e-66 254.2 193 63.7
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.2e-65 253.8 193 66.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.1e-65 253.1 182 67.0
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.1e-65 253.1 190 65.8
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 2.7e-65 252.7 198 64.6
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 3.5e-65 252.3 194 62.9
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 3.5e-65 252.3 179 66.5
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 3.5e-65 252.3 173 72.3
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.5e-65 252.3 197 62.9
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 4.6e-65 251.9 194 62.9
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 4.6e-65 251.9 193 63.2
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 4.6e-65 251.9 193 63.2
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.6e-65 251.9 183 69.4
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 4.6e-65 251.9 186 68.3
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 7.8e-65 251.1 192 64.6
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 7.8e-65 251.1 192 65.1
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.0e-64 250.8 172 70.3
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.0e-64 250.8 193 64.8
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-64 250.4 181 67.4
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.3e-64 250.4 193 65.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 1.3e-64 250.4 174 69.5
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 2.3e-64 249.6 177 70.6
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.3e-64 249.6 181 66.9
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 5.1e-64 248.4 173 68.8
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 5.1e-64 248.4 187 66.3
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 6.6e-64 248.1 178 67.4
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 6.6e-64 248.1 178 67.4
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 6.6e-64 248.1 178 67.4
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 6.6e-64 248.1 192 63.0
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 6.6e-64 248.1 200 63.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 6.6e-64 248.1 200 63.5
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 8.7e-64 247.7 193 65.3
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.1e-63 247.3 193 65.3
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.9e-63 246.5 178 67.4
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.5e-63 246.1 182 65.4
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 5.6e-63 245.0 185 63.2
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 7.3e-63 244.6 182 65.4
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 9.6e-63 244.2 182 64.3
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 3.6e-62 242.3 175 68.6
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 3.6e-62 242.3 185 65.9
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 3.6e-62 242.3 183 64.5
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 3.6e-62 242.3 204 58.8
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 4.8e-62 241.9 187 65.8
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.1e-61 240.7 194 61.3
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 3.1e-61 239.2 193 63.2
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 6.9e-61 238.0 182 64.8
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 9.0e-61 237.7 171 67.3
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 9.0e-61 237.7 171 68.4
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.2e-60 237.3 152 73.0
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 2.6e-60 236.1 179 67.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.4e-60 235.7 210 59.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 5.8e-60 235.0 186 64.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 5.8e-60 235.0 175 63.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.8e-59 232.3 190 63.2
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 4.9e-59 231.9 179 62.6
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 5.1e-56 221.9 178 61.8
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.9e-55 219.9 178 61.2
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.8e-54 216.1 151 68.9
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 6.2e-54 214.9 193 57.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 3.1e-53 212.6 168 63.7
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 5.8e-52 208.4 182 58.2
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 4.2e-50 202.2 123 74.8
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 5.5e-50 201.8 192 56.2
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-48 197.2 123 79.7
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 5.1e-48 195.3 181 57.5
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.3e-47 192.6 122 77.9
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.3e-47 192.6 150 62.0
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 4.3e-47 192.2 149 65.1
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 2.4e-45 186.4 172 58.7
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 7.6e-44 181.4 174 55.7
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 2.9e-43 179.5 146 61.0
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.4e-42 177.2 150 58.0
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.5e-42 176.4 200 51.0
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 7.1e-42 174.9 122 74.6
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.6e-41 173.7 149 57.7
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 2.2e-35 153.3 129 52.7
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.8e-35 152.5 113 65.5
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.6e-33 147.1 186 46.8
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 3.3e-31 139.4 143 50.3
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.3e-30 137.5 84 82.1
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.2e-30 136.7 92 70.7
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 3.7e-30 136.0 135 49.6
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 2.4e-29 133.3 193 42.5
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 2.4e-29 133.3 193 42.5
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.0e-24 117.9 183 39.9
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 6.7e-24 115.2 146 43.2
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 4.8e-22 109.0 85 62.4
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.2e-17 94.4 59 71.2
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 6.1e-17 92.0 131 39.7
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-16 90.9 146 36.3
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.4e-16 90.9 146 36.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 3.9e-16 89.4 61 67.2
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 4.7e-09 65.9 66 54.5


User provided reference genes

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