Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 6.9e-50 200.3 98 100.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 2.7e-22 108.6 57 93.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 3.6e-22 108.2 57 93.0
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 4.7e-22 107.8 57 93.0
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.0e-21 106.7 57 91.2
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.6e-17 92.8 58 74.1
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.6e-17 92.8 58 74.1
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.0e-16 90.1 57 77.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.0e-16 90.1 58 74.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.0e-16 90.1 58 74.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-16 89.4 58 74.1
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.2e-16 89.0 63 71.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.9e-16 88.6 58 74.1
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.9e-16 88.6 58 72.4
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 2.9e-16 88.6 58 74.1
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 3.8e-16 88.2 58 72.4
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 3.8e-16 88.2 63 68.3
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.8e-16 88.2 63 68.3
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.8e-16 88.2 58 72.4
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 3.8e-16 88.2 58 74.1
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 5.0e-16 87.8 58 70.7
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 5.0e-16 87.8 58 72.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 5.0e-16 87.8 58 72.4
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.5e-16 87.4 58 72.4
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.5e-16 87.4 58 72.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 8.5e-16 87.0 58 70.7
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.5e-16 87.0 58 70.7
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.5e-16 87.0 58 70.7
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-15 86.7 58 69.0
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.1e-15 86.7 58 69.0
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-15 86.7 58 69.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.1e-15 86.7 57 77.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.1e-15 86.7 60 70.0
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.1e-15 86.7 55 72.7
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.5e-15 86.3 58 70.7
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.5e-15 86.3 58 72.4
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.5e-15 86.3 58 72.4
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.9e-15 85.9 60 70.0
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.5e-15 85.5 57 68.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.2e-15 85.1 57 73.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.2e-15 85.1 60 70.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 3.2e-15 85.1 57 73.7
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 4.2e-15 84.7 58 72.4
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.2e-15 84.7 60 66.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 5.5e-15 84.3 58 70.7
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.2e-15 84.0 58 70.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.2e-15 84.0 58 70.7
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 7.2e-15 84.0 58 70.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 7.2e-15 84.0 58 69.0
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 9.4e-15 83.6 58 69.0
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 9.4e-15 83.6 60 66.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 9.4e-15 83.6 58 70.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.2e-14 83.2 54 75.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.2e-14 83.2 60 65.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.2e-14 83.2 57 68.4
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-14 82.4 58 65.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.7e-14 82.0 58 69.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.6e-14 81.6 57 70.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.7e-14 81.3 58 69.0
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.7e-14 81.3 57 68.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.7e-14 81.3 60 66.7
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 6.1e-14 80.9 57 68.4
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 6.1e-14 80.9 57 68.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 6.1e-14 80.9 58 65.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 6.1e-14 80.9 57 68.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 6.1e-14 80.9 58 65.5
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 8.0e-14 80.5 63 63.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 8.0e-14 80.5 58 63.8
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 8.0e-14 80.5 57 66.7
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.0e-13 80.1 57 68.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.4e-13 79.7 57 68.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-13 79.3 57 68.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.8e-13 79.3 57 66.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.8e-13 79.3 58 67.2
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.8e-13 79.3 57 68.4
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.3e-13 79.0 58 63.8
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.3e-13 79.0 58 70.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 2.3e-13 79.0 56 67.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 4.0e-13 78.2 57 66.7
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 4.0e-13 78.2 57 66.7
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 5.2e-13 77.8 58 67.2
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 5.2e-13 77.8 58 62.1
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 5.2e-13 77.8 58 62.1
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 6.8e-13 77.4 54 72.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.8e-13 77.4 57 66.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 8.8e-13 77.0 59 64.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 8.8e-13 77.0 57 64.9
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.5e-12 76.3 58 65.5
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.5e-12 76.3 57 63.2
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-12 75.9 63 63.5
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-12 75.9 55 67.3
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 2.0e-12 75.9 57 64.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.0e-12 75.9 58 60.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.0e-12 75.9 63 61.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.6e-12 75.5 55 65.5
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.6e-12 75.5 55 65.5
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.6e-12 75.5 58 63.8
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.6e-12 75.5 58 65.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.4e-12 75.1 58 60.3
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.4e-12 75.1 63 61.9
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.4e-12 75.1 63 61.9
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.4e-12 75.1 57 61.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.4e-12 74.7 58 60.3
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 4.4e-12 74.7 57 63.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 5.7e-12 74.3 57 64.9
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.7e-12 74.3 58 62.1
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.3e-11 73.2 58 63.8
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.3e-11 73.2 57 59.6
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.3e-11 73.2 57 59.6
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.3e-11 73.2 57 59.6
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.3e-11 73.2 54 66.7
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-11 72.8 58 63.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 3.7e-11 71.6 55 60.0
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 4.8e-11 71.2 57 57.9
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 6.3e-11 70.9 57 56.1
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 8.3e-11 70.5 58 56.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.1e-10 70.1 55 61.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.4e-10 69.7 40 82.5
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.4e-10 68.9 63 58.7
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.1e-10 68.6 55 56.4
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 3.1e-10 68.6 55 56.4
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 9.1e-10 67.0 59 59.3
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.2e-09 66.6 63 57.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 2.0e-09 65.9 63 55.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.7e-09 65.5 56 58.9
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.7e-09 65.5 58 62.1
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.5e-09 64.7 58 53.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 5.9e-09 64.3 41 68.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.0e-08 63.5 55 49.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.5e-07 59.7 58 55.2
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.2e-07 58.2 57 49.1
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 5.5e-07 57.8 36 69.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 2.7e-06 55.5 58 46.6


User provided reference genes

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