Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.1e-190 669.8 338 100.0
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.1e-185 651.0 338 96.4
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 6.7e-185 650.6 338 96.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.6e-183 646.0 338 95.3
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 4.2e-179 631.3 338 92.3
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.2e-178 629.8 338 92.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 5.1e-177 624.4 338 90.8
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 5.1e-177 624.4 338 91.1
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.7e-177 624.0 338 91.1
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-176 623.2 338 90.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.9e-176 622.5 338 90.5
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 3.3e-176 621.7 338 90.8
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.8e-175 618.6 332 92.5
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 4.8e-175 617.8 339 90.9
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.3e-175 617.5 338 90.2
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.3e-175 617.5 334 91.3
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.3e-175 617.5 335 90.4
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 90.2
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.8e-174 615.9 338 89.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 2.4e-174 615.5 338 89.6
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 90.5
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 89.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 89.3
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 89.6
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.9
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.9
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.6
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 4.5e-173 611.3 336 89.6
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.0e-172 610.1 333 90.1
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.3e-172 609.8 337 90.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 3.8e-172 608.2 339 88.8
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.1
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.1
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 6.5e-172 607.4 338 89.6
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 6.5e-172 607.4 338 89.3
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 8.4e-172 607.1 332 89.2
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 8.4e-172 607.1 337 89.3
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 8.4e-172 607.1 338 89.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.4e-171 606.3 335 89.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 88.5
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.9e-171 605.9 338 88.2
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.5e-171 605.5 335 90.1
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 339 88.8
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 3.2e-171 605.1 339 88.8
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.2e-171 605.1 339 88.8
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.5e-171 604.4 338 88.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 5.5e-171 604.4 335 89.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 7.2e-171 604.0 338 87.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 9.3e-171 603.6 338 87.9
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 9.3e-171 603.6 338 88.5
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 9.3e-171 603.6 338 88.2
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.6e-170 602.8 339 88.5
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-170 602.8 339 88.5
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-170 602.8 339 88.5
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.1e-170 602.4 339 87.3
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.7e-170 602.1 339 88.2
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.6e-170 601.7 338 88.2
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 6.1e-170 600.9 338 88.5
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 7.9e-170 600.5 332 89.2
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.0e-169 598.6 338 86.7
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 3.0e-169 598.6 333 88.6
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.0e-169 598.6 339 86.1
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 339 87.6
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 340 87.6
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 337 88.7
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 6.7e-169 597.4 332 88.3
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 6.7e-169 597.4 339 88.2
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 8.7e-169 597.0 339 87.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.9e-168 595.9 339 87.0
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 3.3e-168 595.1 332 89.2
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 3.3e-168 595.1 337 88.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.8e-167 592.0 334 88.9
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 4.8e-167 591.3 325 90.8
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.8e-167 591.3 340 86.5
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.3e-167 590.9 341 85.9
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.8e-166 589.3 333 87.4
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.1e-166 588.2 338 84.6
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.1e-166 588.2 316 92.1
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 9.0e-166 587.0 354 83.3
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 9.0e-166 587.0 332 86.7
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 2.2e-164 582.4 380 78.4
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 2.9e-164 582.0 317 90.5
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 4.2e-163 578.2 338 86.4
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 319 89.3
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.0e-161 573.5 319 87.5
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.4e-161 573.2 320 89.1
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.0e-161 572.0 338 82.8
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.9e-161 571.6 335 83.3
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 6.7e-161 570.9 309 90.0
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 8.8e-161 570.5 332 84.9
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 3.3e-160 568.5 336 83.0
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.7e-159 566.2 336 82.7
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.2e-159 565.8 336 82.4
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.2e-159 565.8 336 82.1
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 2.8e-159 565.5 336 82.4
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.8e-159 565.5 335 82.1
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 3.7e-159 565.1 336 82.4
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 4.8e-159 564.7 336 82.1
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 4.8e-159 564.7 335 82.7
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 8.2e-159 563.9 336 81.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.1e-158 563.5 335 82.1
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.1e-158 563.5 335 81.8
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.4e-158 563.1 335 82.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-158 562.4 337 81.6
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.1e-158 562.0 336 82.1
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.1e-158 562.0 338 81.4
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.1e-158 562.0 335 81.8
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 4.1e-158 561.6 309 88.3
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.9e-158 560.8 335 81.8
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 9.1e-158 560.5 336 81.8
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 2.0e-157 559.3 337 81.3
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.6e-157 558.9 336 81.5
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.9e-157 557.8 339 83.5
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.2e-156 555.8 327 82.0
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 3.8e-156 555.1 338 83.4
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-155 553.5 351 78.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.1e-155 553.5 336 78.3
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.4e-155 553.1 343 79.3
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.5e-152 543.1 332 77.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 4.4e-152 541.6 337 78.0
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.3e-150 534.6 334 76.3
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.6e-149 533.1 334 76.3
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 2.6e-149 532.3 316 82.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 2.2e-148 529.3 420 67.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.5e-147 526.6 378 72.8
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 5.3e-142 508.1 294 87.1
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.5e-141 505.4 338 78.7
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 7.7e-141 504.2 363 71.9
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.8e-140 501.9 264 95.5
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.8e-140 501.9 264 95.5
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 8.5e-140 500.7 264 94.3
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.3e-137 492.7 271 88.9
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 7.0e-134 481.1 320 71.6
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.7e-132 476.5 338 74.0
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.9e-124 449.1 268 83.6
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.6e-122 443.4 344 66.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.1e-118 430.6 238 88.2
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 3.0e-116 422.5 251 80.9
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.0e-113 414.1 311 62.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.5e-112 410.2 216 94.0
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 6.4e-111 404.8 251 79.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.6e-109 400.2 241 78.8
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.7e-103 379.0 330 58.2
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.7e-100 370.2 315 56.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.1e-53 213.8 128 81.2
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-44 184.5 168 58.9
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 3.1e-33 146.7 180 52.2
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.1e-30 138.3 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 6.7e-28 129.0 73 83.6
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-26 123.2 72 83.3
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.5e-24 116.3 73 75.3
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-20 105.1 104 57.7
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.3e-15 88.2 51 82.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.4e-12 78.2 61 70.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 2.0e-11 74.3 56 71.4
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.0e-11 74.3 41 82.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 4.9e-10 69.7 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 4.9e-10 69.7 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.4e-09 67.4 100 43.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.3e-06 55.8 34 76.5
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 9.5e-06 55.5 56 57.1


User provided reference genes

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