Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 2.6e-245 851.7 447 100.0
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 4.7e-202 708.0 457 83.8
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.2e-184 650.2 422 82.9
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 2.9e-180 635.6 391 86.7
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.7e-140 503.4 411 66.2
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 2.3e-140 503.1 391 67.5
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 5.1e-140 501.9 389 67.6
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.6e-138 496.9 392 68.9
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.4e-137 493.0 345 71.9
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 6.4e-135 485.0 384 67.4
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 1.6e-133 480.3 331 73.7
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 7.8e-133 478.0 388 65.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.7e-132 476.9 366 66.9
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 3.0e-132 476.1 331 73.7
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 6.6e-132 474.9 401 63.6
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 4.3e-131 472.2 365 67.7
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 7.3e-131 471.5 416 61.3
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 7.3e-131 471.5 398 63.8
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 8.1e-130 468.0 389 63.8
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.4e-129 467.2 388 65.7
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 1.4e-129 467.2 385 64.4
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 3.1e-129 466.1 387 64.9
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 3.1e-129 466.1 385 64.4
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 9.0e-129 464.5 345 68.1
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 9.0e-129 464.5 345 68.1
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.2e-128 464.2 332 71.1
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 4.4e-128 462.2 314 73.9
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 4.4e-128 462.2 400 63.5
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 9.9e-128 461.1 390 63.1
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 9.9e-128 461.1 385 64.4
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.3e-127 460.7 382 63.1
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.9e-127 459.5 393 63.4
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 3.8e-127 459.1 346 67.6
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 4.9e-127 458.8 337 69.4
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 8.4e-127 458.0 389 63.8
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.4e-126 457.2 340 69.1
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 2.4e-126 456.4 392 64.0
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 4.2e-126 455.7 346 67.3
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 5.4e-126 455.3 385 62.3
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 5.4e-126 455.3 353 68.8
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 9.3e-126 454.5 340 68.8
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.7e-125 453.0 336 69.3
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 2.7e-125 453.0 349 68.2
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 3.5e-125 452.6 336 68.8
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 3.0e-124 449.5 329 69.6
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 6.6e-124 448.4 387 62.8
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.9e-123 446.8 317 72.2
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.1e-121 441.0 386 62.2
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.4e-121 440.7 375 61.6
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.4e-121 439.9 376 62.0
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.2e-120 437.6 336 65.5
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 2.9e-119 433.0 333 64.6
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 6.4e-119 431.8 336 65.5
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 2.4e-118 429.9 375 59.7
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 2.4e-118 429.9 337 65.6
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 4.2e-118 429.1 355 62.8
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 9.3e-118 427.9 336 64.9
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 9.3e-118 427.9 340 64.4
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 9.3e-118 427.9 337 65.0
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 2.7e-117 426.4 336 64.9
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.7e-117 426.4 323 65.6
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 4.6e-117 425.6 340 64.7
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 4.6e-117 425.6 340 64.7
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 4.6e-117 425.6 321 65.7
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 3.0e-116 422.9 336 65.5
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 5.1e-116 422.2 333 65.5
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 5.1e-116 422.2 306 70.6
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 6.7e-116 421.8 332 64.2
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 8.7e-116 421.4 322 65.8
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 4.3e-115 419.1 341 63.0
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.3e-114 417.5 323 65.6
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 6.2e-114 415.2 330 64.8
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.1e-113 414.5 372 57.8
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 2.4e-113 413.3 333 64.6
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 4.0e-113 412.5 337 65.0
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 5.3e-113 412.1 333 64.3
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 6.9e-113 411.8 326 65.0
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 5.8e-112 408.7 286 71.3
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 5.8e-112 408.7 369 59.1
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.8e-112 408.7 309 65.7
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 4.9e-111 405.6 297 68.7
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.6e-109 400.6 284 71.1
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.6e-109 400.6 373 60.3
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.5e-107 393.3 337 62.0
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.8e-106 389.8 405 55.1
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 2.8e-106 389.8 403 54.3
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.5e-104 384.0 256 75.4
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.5e-104 384.0 320 61.6
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.9e-102 377.1 333 63.4
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 4.1e-97 359.4 285 66.0
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 1.5e-96 357.5 391 50.9
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.0e-96 357.1 246 72.0
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.8e-92 344.0 230 74.3
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.1e-89 334.7 342 50.3
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 1.2e-88 331.3 301 55.8
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 2.6e-88 330.1 309 56.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.0e-87 328.2 312 56.7
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.3e-87 327.8 318 57.5
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 8.5e-87 325.1 268 64.9
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 7.0e-81 305.4 320 49.4
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 9.1e-81 305.1 306 55.9
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.9e-79 300.1 198 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 3.2e-78 296.6 311 48.9
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.8e-74 283.5 250 59.6
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.5e-72 276.2 271 57.9
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 7.7e-72 275.4 188 72.9
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.0e-68 263.1 179 74.3
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.8e-66 256.9 228 59.2
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.7e-61 240.4 159 76.1
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 5.7e-59 232.6 244 54.5
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 9.8e-59 231.9 200 62.0
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 5.4e-57 226.1 290 43.1
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 9.8e-51 205.3 300 44.0
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 2.3e-47 194.1 270 42.2
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 4.9e-42 176.4 137 65.7
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.7e-40 170.6 286 34.6
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.1e-31 139.8 105 65.7
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 8.1e-29 132.5 240 39.6
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 3.1e-28 130.6 129 53.5
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.3e-23 115.2 83 75.9
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 8.6e-23 112.5 229 37.6
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.1e-22 112.1 83 72.3
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.6e-13 81.6 71 52.1
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 6.2e-13 79.7 62 62.9
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 4.6e-08 63.5 46 69.6


User provided reference genes

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