Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.7e-258 894.8 447 100.0
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.1e-227 793.1 448 88.2
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 9.3e-227 790.0 447 86.4
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 1.9e-219 765.8 447 84.3
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.8e-209 732.6 411 86.4
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.8e-182 642.9 446 70.4
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.7e-181 639.0 432 71.3
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.5e-179 632.5 446 68.4
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.6e-178 629.8 430 69.3
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 3.6e-178 628.6 445 69.0
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.4e-177 626.7 446 68.2
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.8e-177 626.3 433 70.0
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 5.2e-177 624.8 433 70.2
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.2e-176 623.6 444 67.8
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.7e-176 621.3 446 67.7
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 7.5e-176 620.9 433 70.7
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.2e-175 619.4 445 69.2
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 8.3e-175 617.5 448 67.2
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.4e-174 614.8 442 66.3
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 9.1e-174 614.0 433 70.2
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.2e-173 613.6 446 67.7
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.6e-173 613.2 433 69.1
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.5e-173 611.7 433 69.5
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.0e-172 610.5 446 66.1
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 2.3e-172 609.4 431 69.1
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 2.9e-172 609.0 431 69.1
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 6.6e-172 607.8 436 68.8
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.2e-171 605.1 446 67.5
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 5.5e-171 604.7 436 67.7
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 5.5e-171 604.7 452 67.7
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 7.2e-171 604.4 438 67.8
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 6.1e-170 601.3 441 66.7
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.0e-169 600.5 442 65.2
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.0e-169 600.5 435 66.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.8e-169 599.7 433 67.7
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.0e-169 598.6 430 67.7
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 4.0e-169 598.6 429 66.7
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.2e-169 598.2 432 66.9
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 5.7e-168 594.7 441 63.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 9.8e-168 594.0 432 66.9
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 9.8e-168 594.0 433 67.2
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.2e-167 592.8 448 65.8
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.2e-167 592.8 448 65.8
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.8e-166 589.7 427 66.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 9.2e-166 587.4 434 66.8
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.6e-165 586.6 434 66.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.0e-165 586.3 425 67.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.7e-165 585.9 434 65.4
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.5e-165 585.5 448 65.2
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 5.9e-165 584.7 439 64.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.0e-164 583.9 432 66.9
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 5.0e-164 581.6 431 68.0
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 6.6e-164 581.3 431 67.7
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.1e-163 580.5 447 63.3
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.9e-163 579.7 382 73.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.9e-163 579.7 442 65.4
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 2.5e-163 579.3 431 67.7
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 3.3e-163 578.9 414 66.4
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.3e-163 578.9 427 64.6
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.6e-163 578.2 442 65.6
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 9.5e-163 577.4 431 66.1
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 4.0e-161 572.0 430 65.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 8.9e-161 570.9 433 64.9
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 8.9e-161 570.9 430 65.3
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.8e-160 568.2 442 62.7
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 6.4e-159 564.7 439 64.5
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 6.4e-159 564.7 439 64.5
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.4e-158 563.5 428 63.6
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.2e-158 562.4 441 63.3
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 5.4e-158 561.6 430 64.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 5.4e-158 561.6 422 64.2
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.2e-157 560.5 431 64.7
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.7e-157 559.3 428 65.9
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.0e-156 557.4 438 62.1
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 3.0e-156 555.8 429 64.6
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 4.7e-154 548.5 429 63.4
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.4e-153 547.0 416 66.3
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 2.3e-153 546.2 429 62.2
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 6.8e-153 544.7 422 64.7
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 8.9e-153 544.3 431 62.6
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.5e-152 543.5 439 63.6
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.4e-152 542.0 438 62.8
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.9e-151 539.3 429 62.0
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.9e-150 536.6 438 62.1
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.9e-150 536.6 452 59.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.4e-150 536.2 431 60.8
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 4.1e-150 535.4 457 60.8
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.7e-149 532.7 438 61.0
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 6.0e-149 531.6 439 60.8
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.3e-148 530.4 374 67.9
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 3.0e-148 529.3 450 61.1
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 8.6e-148 527.7 431 59.2
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.1e-146 523.1 378 66.4
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.7e-146 521.9 431 62.6
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 4.7e-146 521.9 400 65.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 4.0e-145 518.8 430 61.4
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.2e-144 517.3 428 60.0
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.2e-144 517.3 438 61.2
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 3.4e-144 515.8 420 62.4
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 3.4e-144 515.8 420 62.4
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-143 513.5 431 61.3
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-143 513.5 431 61.3
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-143 513.5 436 60.1
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 2.2e-143 513.1 450 59.1
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.2e-143 513.1 349 69.6
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.1e-142 510.8 349 69.1
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-142 510.4 451 59.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 2.4e-142 509.6 349 69.6
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.1e-142 508.8 438 60.5
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 4.1e-142 508.8 438 59.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.6e-141 506.9 435 60.0
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.1e-141 506.5 430 59.1
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.0e-140 504.2 437 59.7
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.0e-140 504.2 451 58.3
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.7e-140 503.4 348 68.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.5e-139 500.4 443 57.3
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.9e-139 500.0 434 58.3
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-138 496.9 400 62.5
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.5e-136 490.3 409 59.2
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.7e-135 486.9 367 64.9
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.5e-131 473.8 355 67.3
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.5e-131 473.0 445 54.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.0e-129 465.7 442 57.2
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 4.9e-127 458.8 318 69.2
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.3e-118 427.9 326 64.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.3e-114 417.5 306 67.3
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.5e-107 394.0 428 50.0
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.4e-105 386.7 383 55.1
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 6.5e-103 378.6 319 60.5
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 6.5e-103 378.6 319 60.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.6e-98 364.0 389 50.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 7.9e-93 345.1 442 44.6
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 8.5e-79 298.5 226 64.6
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 6.5e-71 272.3 187 70.6
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.3e-66 255.4 248 54.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.8e-65 254.2 394 40.4
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 5.5e-62 242.7 163 69.9
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.8e-59 231.9 161 67.7
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.2e-56 224.9 261 50.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.9e-41 174.5 160 56.2
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.6e-37 160.2 109 67.9
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 5.6e-30 136.3 138 53.6
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 8.1e-29 132.5 110 62.7
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 6.8e-28 129.4 111 60.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 8.9e-28 129.0 100 58.0
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 4.8e-13 80.1 50 66.0
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.7e-08 64.3 67 47.8


User provided reference genes

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