Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.5e-228 794.3 407 100.0
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.2e-196 689.9 414 85.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 5.5e-194 681.0 415 85.1
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 5.7e-191 671.0 410 86.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 6.4e-150 534.6 442 67.2
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.2e-143 513.8 406 66.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.8e-142 508.8 347 72.9
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 3.8e-142 508.8 404 65.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 3.2e-141 505.8 403 65.5
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.6e-140 501.9 380 66.6
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.6e-140 501.9 400 65.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 6.0e-140 501.5 346 69.9
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 6.0e-140 501.5 346 69.9
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 7.9e-140 501.1 346 70.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 7.9e-140 501.1 346 70.2
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 6.7e-139 498.0 346 71.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 8.7e-139 497.7 346 69.7
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.5e-138 496.9 346 69.9
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.5e-138 496.1 360 67.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.5e-138 496.1 346 69.7
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 3.3e-138 495.7 352 69.9
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.3e-138 495.7 406 62.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.6e-138 495.0 341 71.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 7.4e-138 494.6 375 65.9
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 9.6e-138 494.2 348 70.7
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.3e-137 493.8 347 69.5
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.3e-137 493.8 373 68.6
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-137 493.4 346 68.8
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.7e-137 492.3 346 68.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.7e-137 492.3 387 64.6
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 4.8e-137 491.9 357 68.6
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.2e-137 491.5 380 65.3
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.1e-137 491.1 346 68.5
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 8.1e-137 491.1 352 69.6
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.4e-136 490.3 348 69.5
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.4e-136 489.6 359 68.5
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 3.1e-136 489.2 346 70.5
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.0e-136 488.8 351 68.4
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 9.0e-136 487.6 357 68.1
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.2e-135 487.3 346 69.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 5.8e-135 485.0 318 75.5
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 5.8e-135 485.0 368 66.8
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.7e-134 483.4 355 69.6
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-134 483.4 318 75.2
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-134 483.4 318 75.2
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.9e-134 482.6 364 66.5
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 6.4e-134 481.5 405 60.7
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 8.4e-134 481.1 348 68.7
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 8.4e-134 481.1 391 63.9
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.1e-133 480.7 352 67.9
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.4e-133 480.3 344 67.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.5e-133 479.6 348 66.7
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 7.1e-133 478.0 347 68.3
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 7.1e-133 478.0 347 66.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-132 475.3 394 62.4
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 4.6e-132 475.3 346 66.2
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 6.0e-132 474.9 348 67.8
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 6.0e-132 474.9 370 65.1
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 7.9e-132 474.6 348 67.5
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 7.9e-132 474.6 346 67.6
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 7.9e-132 474.6 346 67.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 7.9e-132 474.6 343 67.6
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 7.9e-132 474.6 345 67.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.8e-131 473.4 348 67.0
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.3e-131 473.0 374 62.6
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.1e-130 470.7 349 67.3
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.5e-130 470.3 346 67.1
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.5e-130 470.3 411 60.1
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.5e-130 469.5 346 67.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.3e-130 468.8 336 69.0
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 7.4e-130 468.0 346 66.8
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 9.6e-130 467.6 362 65.7
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.3e-129 467.2 346 66.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.6e-129 466.8 348 66.7
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.6e-129 466.8 348 66.7
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.6e-129 466.8 346 66.5
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.8e-129 466.1 351 66.1
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 2.8e-129 466.1 357 63.6
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.8e-129 465.3 412 60.0
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 6.2e-129 464.9 350 64.9
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 8.2e-129 464.5 405 58.5
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-128 463.8 399 59.4
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 4.0e-128 462.2 305 74.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.4e-127 459.1 345 64.6
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.3e-126 457.2 361 62.9
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.9e-126 456.1 378 60.6
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.5e-125 453.0 316 69.3
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.2e-125 452.6 344 63.7
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.2e-125 452.2 344 64.5
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.1e-124 449.9 346 62.7
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.9e-124 448.0 402 59.0
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 2.5e-122 443.0 316 69.6
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.4e-120 437.2 327 64.2
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.8e-120 436.8 398 59.3
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 2.4e-120 436.4 321 67.9
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.1e-120 435.6 431 53.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.5e-114 417.2 374 58.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.8e-112 410.2 346 56.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.4e-112 409.8 350 61.4
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.1e-112 409.5 277 71.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 3.4e-111 406.0 386 57.0
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 3.2e-109 399.4 321 60.7
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.2e-108 397.5 338 59.2
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.1e-108 396.7 269 71.4
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.8e-107 393.7 270 70.4
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 2.3e-107 393.3 313 64.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.3e-107 393.3 278 70.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 3.3e-106 389.4 334 57.5
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 7.4e-106 388.3 588 41.0
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 8.2e-105 384.8 334 63.2
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 8.2e-97 358.2 261 67.0
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.0e-94 351.3 347 51.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.5e-90 337.4 346 54.0
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 4.4e-90 335.9 325 52.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 3.5e-87 326.2 316 52.5
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.0e-86 324.7 270 62.6
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.2e-86 323.6 313 53.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-85 321.2 366 48.1
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 6.1e-84 315.5 224 69.6
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.0e-78 295.8 220 62.7
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 8.0e-76 288.5 276 56.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.8e-75 287.3 295 52.2
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 3.9e-70 269.6 257 57.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.5e-69 267.7 243 58.0
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.3e-67 260.4 211 63.0
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.7e-65 254.2 173 69.4
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.2e-65 253.8 203 64.0
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.6e-60 236.5 245 52.2
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.9e-50 201.8 224 47.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.5e-45 188.0 158 63.9
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.1e-43 181.8 117 68.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.5e-37 160.6 330 36.1
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-35 155.2 145 53.1
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.4e-35 154.8 91 76.9
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 6.9e-35 152.5 302 33.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 3.5e-31 140.2 76 81.6
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 3.3e-29 133.7 339 29.8
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.1e-21 108.6 103 49.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 2.0e-18 97.8 188 35.1
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 5.8e-18 96.3 135 40.7
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.3e-14 85.1 77 58.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.7e-14 82.8 65 64.6


User provided reference genes

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