Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 2.9e-54 214.9 105 100.0
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 2.9e-38 161.8 103 75.7
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.8e-32 142.5 107 69.2
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 2.0e-31 139.0 105 67.6
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 2.5e-21 105.5 102 52.9
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 8.0e-20 100.5 102 50.0
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.5e-18 96.3 95 48.4
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.0e-18 95.9 102 45.1
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.0e-18 95.9 103 50.5
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 2.6e-18 95.5 102 49.0
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 3.4e-18 95.1 101 46.5
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 3.4e-18 95.1 104 50.0
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 5.7e-18 94.4 84 57.1
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 5.7e-18 94.4 97 51.5
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 7.5e-18 94.0 103 48.5
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 7.5e-18 94.0 84 56.0
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 9.8e-18 93.6 102 46.1
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 9.8e-18 93.6 87 52.9
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 1.7e-17 92.8 88 56.8
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.2e-17 92.4 82 58.5
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 4.8e-17 91.3 102 47.1
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 6.3e-17 90.9 105 45.7
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 1.1e-16 90.1 87 50.6
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.4e-16 89.7 102 47.1
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 2.4e-16 89.0 82 54.9
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 2.4e-16 89.0 82 54.9
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 5.4e-16 87.8 84 56.0
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 7.0e-16 87.4 104 47.1
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.2e-15 86.7 88 50.0
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.6e-15 86.3 87 48.3
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.6e-15 86.3 103 46.6
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 2.0e-15 85.9 83 51.8
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 2.0e-15 85.9 92 50.0
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 2.0e-15 85.9 83 50.6
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 2.7e-15 85.5 82 52.4
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 5.9e-15 84.3 86 51.2
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.7e-14 82.8 87 47.1
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 2.2e-14 82.4 85 54.1
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 2.2e-14 82.4 82 48.8
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 2.9e-14 82.0 93 47.3
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 3.8e-14 81.6 83 50.6
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 8.5e-14 80.5 101 41.6
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 8.5e-14 80.5 72 55.6
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 8.5e-14 80.5 77 51.9
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.5e-13 79.7 90 50.0
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 2.5e-13 79.0 104 46.2
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 3.2e-13 78.6 84 50.0
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 3.2e-13 78.6 87 49.4
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 3.2e-13 78.6 80 53.8
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 5.5e-13 77.8 102 42.2
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.1e-12 75.9 77 58.4
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.1e-12 75.9 77 58.4
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.7e-12 75.5 89 42.7
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 3.6e-12 75.1 77 48.1
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 8.0e-12 73.9 77 49.4
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 8.0e-12 73.9 82 46.3
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 8.0e-12 73.9 90 42.2
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.0e-11 73.6 79 48.1
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 2.3e-11 72.4 84 42.9
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 4.0e-11 71.6 82 41.5
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.0e-10 69.3 88 40.9
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.7e-10 67.8 89 43.8
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 9.8e-10 67.0 81 42.0
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 4.9e-09 64.7 84 42.9
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 6.3e-09 64.3 77 42.9
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 1.1e-08 63.5 78 42.3
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 3.1e-08 62.0 78 39.7
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 3.1e-08 62.0 78 37.2
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 4.1e-08 61.6 79 38.0
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 4.1e-08 61.6 79 38.0
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 5.4e-08 61.2 79 36.7
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 5.4e-08 61.2 78 39.7
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 5.4e-08 61.2 87 34.5
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 5.4e-08 61.2 87 34.5
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 9.2e-08 60.5 78 39.7
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 9.2e-08 60.5 79 38.0
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 9.2e-08 60.5 79 36.7
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 9.2e-08 60.5 79 36.7
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 9.2e-08 60.5 79 36.7
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.6e-07 59.7 78 38.5
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 2.7e-07 58.9 78 35.9
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 2.7e-07 58.9 78 35.9
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 4.5e-07 58.2 88 35.2
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.0e-06 57.0 78 34.6
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 3.8e-06 55.1 78 34.6


User provided reference genes

Program Settings