Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.0e-69 266.5 128 100.0
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 8.4e-64 246.9 128 90.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.2e-63 244.6 128 87.5
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 4.2e-63 244.6 128 89.8
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.5e-62 241.5 128 89.1
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.4e-58 228.8 128 80.5
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.9e-56 221.9 129 80.6
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 4.9e-56 221.1 133 77.4
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 6.5e-56 220.7 128 78.9
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.4e-55 219.5 132 76.5
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.5e-55 218.8 128 78.9
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 3.2e-55 218.4 128 78.1
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 9.3e-55 216.9 128 77.3
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.6e-54 216.1 128 77.3
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.6e-54 216.1 128 75.8
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 2.1e-54 215.7 134 74.6
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.7e-54 215.3 128 76.6
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 2.7e-54 215.3 128 77.3
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 3.5e-54 214.9 130 78.5
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 4.6e-54 214.5 130 77.7
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 6.0e-54 214.2 128 78.9
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.3e-53 213.0 131 77.1
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.3e-53 213.0 130 78.5
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.8e-53 212.6 128 78.9
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 1.8e-53 212.6 127 79.5
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 78.5
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.3e-53 212.2 129 76.7
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 2.3e-53 212.2 128 77.3
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.0e-53 211.8 130 77.7
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 3.9e-53 211.5 131 74.8
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 3.9e-53 211.5 131 74.8
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 3.9e-53 211.5 131 74.8
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.9e-53 211.5 129 79.1
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 5.1e-53 211.1 129 79.1
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.1e-53 211.1 129 79.1
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.1e-53 211.1 129 78.3
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 6.7e-53 210.7 114 86.0
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 6.7e-53 210.7 130 74.6
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 6.7e-53 210.7 128 75.8
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 8.7e-53 210.3 128 75.8
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.1e-52 209.9 131 75.6
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.9e-52 209.1 129 76.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.9e-52 209.1 128 75.0
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 2.5e-52 208.8 130 76.2
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 3.3e-52 208.4 130 76.2
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.3e-52 208.0 130 73.8
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.3e-52 208.0 130 73.8
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.3e-52 208.0 130 73.8
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 5.7e-52 207.6 128 75.0
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 7.4e-52 207.2 129 76.7
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 73.8
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.6e-51 206.1 128 75.0
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.6e-51 206.1 134 72.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 1.6e-51 206.1 128 73.4
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 2.1e-51 205.7 129 75.2
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.1e-51 205.7 128 71.9
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.8e-51 205.3 128 74.2
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.8e-51 205.3 129 73.6
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.7e-51 204.9 130 73.1
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.7e-51 204.9 131 73.3
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.8e-51 204.5 133 72.9
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 4.8e-51 204.5 131 70.2
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 6.2e-51 204.1 130 75.4
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 6.2e-51 204.1 133 73.7
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.2e-51 203.8 129 73.6
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 8.2e-51 203.8 130 73.1
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 8.2e-51 203.8 128 73.4
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 8.2e-51 203.8 128 74.2
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.1e-50 203.4 131 74.0
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.8e-50 202.6 128 73.4
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.8e-50 202.6 128 74.2
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.8e-50 202.6 132 73.5
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.8e-50 202.6 128 73.4
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.4e-50 202.2 128 73.4
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 3.1e-50 201.8 130 71.5
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.1e-50 201.8 129 72.9
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 5.3e-50 201.1 131 74.0
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 5.3e-50 201.1 132 73.5
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 5.3e-50 201.1 130 73.1
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 6.9e-50 200.7 130 73.1
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 6.9e-50 200.7 132 68.9
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 6.9e-50 200.7 128 73.4
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 9.0e-50 200.3 129 69.0
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 9.0e-50 200.3 130 73.1
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 9.0e-50 200.3 130 73.1
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.2e-49 199.9 128 75.0
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.5e-49 199.5 115 78.3
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.0e-49 199.1 129 71.3
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 2.6e-49 198.7 131 68.7
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.6e-49 198.7 133 72.2
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.6e-49 198.7 134 71.6
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.4e-49 198.4 133 69.9
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 5.8e-49 197.6 132 70.5
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 7.6e-49 197.2 128 68.8
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.0e-48 196.8 120 75.8
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.3e-48 196.4 133 67.7
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.3e-48 196.4 127 70.9
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 1.3e-48 196.4 134 66.4
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.9e-48 195.3 133 69.2
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.9e-48 195.3 133 69.2
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 2.9e-48 195.3 120 75.8
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 3.8e-48 194.9 129 69.8
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 3.8e-48 194.9 131 66.4
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 8.4e-48 193.7 130 69.2
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.4e-47 193.0 121 73.6
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.4e-47 193.0 129 71.3
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 1.9e-47 192.6 133 68.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 2.5e-47 192.2 133 67.7
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.2e-47 191.8 134 67.2
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 3.2e-47 191.8 133 67.7
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.2e-47 191.4 133 67.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 5.5e-47 191.0 114 76.3
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.2e-46 189.9 132 71.2
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.2e-46 189.9 129 68.2
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.2e-46 189.9 134 67.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.2e-46 189.9 133 66.9
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 1.2e-46 189.9 133 66.2
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 1.2e-46 189.9 133 66.2
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.2e-46 189.9 133 69.9
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.2e-46 189.9 117 73.5
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.6e-46 189.5 134 67.2
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.6e-46 189.5 134 67.2
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.6e-46 189.5 134 67.2
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 2.1e-46 189.1 134 67.2
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.1e-46 189.1 133 66.2
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 2.1e-46 189.1 145 66.9
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.1e-46 189.1 132 69.7
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 3.5e-46 188.3 134 66.4
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.0e-45 186.8 128 68.8
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.3e-45 186.4 128 63.3
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 2.3e-45 185.7 128 71.1
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 3.0e-45 185.3 128 71.1
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 5.1e-45 184.5 120 70.8
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 6.7e-45 184.1 123 70.7
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 8.7e-45 183.7 128 61.7
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 8.7e-45 183.7 115 71.3
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.5e-44 183.0 125 69.6
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 1.9e-44 182.6 119 70.6
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.9e-44 182.6 127 65.4
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 3.3e-44 181.8 136 66.2
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.3e-43 179.9 104 77.9
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.0e-40 170.2 137 62.0
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 2.2e-40 169.1 128 62.5
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 3.2e-39 165.2 118 61.9
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 4.2e-39 164.9 111 68.5
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 7.9e-38 160.6 103 66.0
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.5e-36 156.4 113 63.7
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.7e-35 152.9 91 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 4.1e-34 148.3 127 56.7
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 8.5e-32 140.6 118 54.2
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 3.9e-29 131.7 78 75.6
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 2.6e-28 129.0 75 73.3
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.2e-27 124.0 85 74.1
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.9e-24 115.5 73 74.0
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.5e-23 113.2 77 64.9
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.9e-23 112.8 77 66.2
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.9e-23 112.8 73 64.4
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 3.3e-20 102.1 73 58.9
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 5.7e-20 101.3 56 82.1
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 4.5e-17 91.7 60 73.3
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.8e-13 79.7 60 61.7
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 4.4e-12 75.1 50 68.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 4.1e-10 68.6 95 32.6
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.1e-07 60.5 42 64.3


User provided reference genes

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