Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1715.3 853 100.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1607.8 848 93.9
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1602.8 853 93.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1456.4 889 82.3
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1451.4 859 84.3
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 853 84.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1438.7 846 84.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1433.3 860 84.3
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1433.3 860 84.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1431.0 856 83.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1423.7 859 83.6
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1416.4 859 82.7
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1414.8 857 83.0
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1413.7 851 83.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1410.2 861 82.5
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1408.3 856 82.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 819 85.8
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1402.5 853 83.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1401.7 860 81.7
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1398.3 861 81.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1396.7 861 82.3
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1394.4 861 81.6
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1393.3 861 81.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 861 81.5
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 860 82.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 860 81.4
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 860 81.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1390.6 843 82.2
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 868 80.9
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1387.1 901 78.6
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1386.7 860 81.3
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1385.9 842 82.3
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1385.2 860 81.7
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1383.6 849 81.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 844 81.9
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 858 81.4
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1380.5 852 80.9
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1379.8 850 81.5
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1379.4 832 83.4
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 849 81.6
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1378.2 850 82.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 812 84.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1374.8 835 82.5
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 892 78.6
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 843 80.4
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1364.7 853 81.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1363.6 857 80.0
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 845 81.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 858 80.4
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1361.3 858 80.1
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1357.8 848 80.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 843 81.4
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 836 82.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 838 81.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1354.3 844 80.8
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1353.6 849 80.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1350.5 853 80.3
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 851 79.8
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 807 82.8
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1347.8 819 82.7
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 870 74.9
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 844 80.0
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 839 80.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1342.8 852 79.8
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 865 78.0
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 836 81.3
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 854 78.9
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 831 80.7
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 826 80.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 832 80.2
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 817 81.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 831 80.0
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 861 79.7
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 847 79.3
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 837 79.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 840 79.9
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 840 79.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 826 80.4
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 819 81.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 819 81.2
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 846 78.6
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 844 79.4
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 847 77.9
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 819 81.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 841 79.7
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 892 75.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 818 80.3
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 848 77.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 831 79.1
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 833 78.6
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 822 79.8
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 838 77.9
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 853 77.0
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 839 79.3
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 839 79.3
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 831 78.8
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 852 77.3
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 852 77.3
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 852 77.3
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 852 77.3
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 836 78.8
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 819 80.5
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 857 76.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 839 79.1
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 820 78.8
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 817 78.5
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 836 78.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 818 79.7
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 821 78.7
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 840 77.5
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 847 76.6
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 815 77.5
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 781 82.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 825 77.0
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 824 77.1
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 824 76.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 858 76.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 823 75.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 834 77.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1252.3 828 78.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 847 71.2
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 771 81.1
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 841 76.2
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 820 76.8
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1229.5 881 73.2
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1228.4 813 76.9
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1227.2 817 77.7
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 820 76.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1223.8 834 76.6
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1221.8 843 74.7
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 706 85.1
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1216.1 758 80.3
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 841 74.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1214.5 822 74.7
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 908 69.1
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1192.9 825 72.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1156.4 826 71.9
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1151.0 773 74.4
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1145.6 813 71.8
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1127.5 832 69.7
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1124.8 737 79.4
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 2.6e-310 1068.5 833 68.5
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.4e-294 1015.0 552 93.5
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.5e-289 999.6 598 80.4
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.4e-276 954.5 838 63.4
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 7.4e-273 944.1 596 73.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 9.3e-260 900.6 591 74.5
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.3e-256 890.2 526 81.6
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-185 653.7 708 54.4
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.3e-149 534.6 457 60.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.2e-143 513.5 329 76.0
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.1e-141 506.1 360 76.4
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 3.7e-115 420.2 317 73.5
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 4.4e-100 370.2 264 70.5
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.9e-99 366.7 398 54.0
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-95 355.1 581 46.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 7.6e-68 263.1 152 80.9
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.6e-60 236.5 155 77.4
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 5.8e-44 183.7 163 58.3
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.0e-35 156.4 678 25.7
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.3e-31 141.4 462 27.7
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 7.4e-31 140.2 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.1e-29 136.3 471 27.6
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 7.6e-28 130.2 68 92.6
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.0e-27 129.8 121 56.2
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.8e-27 127.9 473 27.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.1e-26 126.3 428 28.3
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.1e-26 126.3 74 77.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-25 122.5 96 66.7
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.6e-17 94.7 220 31.8
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-16 91.3 266 27.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.4e-13 82.0 146 37.7
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.3e-11 76.3 76 51.3
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 6.1e-09 67.4 138 33.3
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-08 64.3 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.6e-07 62.0 38 78.9


User provided reference genes

Program Settings