Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.3e-188 662.1 357 100.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.0e-159 565.5 360 85.3
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 3.0e-159 565.5 358 85.2
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 4.3e-158 561.6 373 83.9
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 2.2e-146 522.7 363 81.0
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 3.3e-126 455.7 358 69.8
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.3e-126 455.7 358 68.7
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.1e-124 450.7 358 69.6
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 4.1e-124 448.7 357 68.1
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 6.9e-124 448.0 338 71.3
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 4.5e-123 445.3 358 66.5
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.2e-122 443.0 338 71.9
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.9e-122 442.6 358 66.8
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 3.8e-122 442.2 337 71.2
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 6.5e-122 441.4 343 68.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.4e-121 440.3 338 71.3
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.9e-121 439.9 359 66.9
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 3.6e-120 435.6 346 70.2
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.6e-120 435.6 338 70.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 6.1e-120 434.9 356 66.6
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 6.1e-120 434.9 346 68.8
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.3e-119 433.0 348 67.0
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 5.1e-119 431.8 350 68.0
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.0e-118 429.9 335 69.9
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 9.7e-118 427.6 382 63.4
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.3e-117 424.9 338 69.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 4.1e-116 422.2 365 66.8
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.5e-115 420.2 355 65.6
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 4.5e-115 418.7 375 64.3
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.0e-114 417.5 352 65.3
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.5e-113 412.9 348 64.7
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.2e-113 412.5 371 61.5
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 9.4e-113 411.0 356 63.2
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 9.4e-113 411.0 307 72.6
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.2e-112 410.6 346 65.9
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 1.6e-112 410.2 335 67.2
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 6.1e-112 408.3 340 65.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 3.0e-111 406.0 352 64.2
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.0e-111 406.0 339 64.9
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.0e-111 406.0 339 64.6
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 5.2e-111 405.2 335 65.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 8.8e-111 404.4 345 64.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.0e-110 403.3 345 64.6
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 3.3e-110 402.5 335 65.4
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 4.4e-110 402.1 340 63.2
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 9.7e-110 401.0 337 65.0
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 9.7e-110 401.0 340 64.4
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.7e-109 399.1 443 53.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 3.7e-109 399.1 348 62.4
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.4e-108 397.1 353 61.8
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.8e-108 396.7 370 61.1
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 2.4e-108 396.4 382 61.0
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 5.3e-108 395.2 357 61.6
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.2e-107 394.0 341 63.6
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-107 393.7 338 65.1
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.0e-106 391.0 354 60.5
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.3e-106 390.6 344 61.6
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.2e-106 389.8 355 60.3
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 3.8e-106 389.0 349 61.6
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 3.8e-106 389.0 349 61.9
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 6.5e-106 388.3 349 61.6
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 6.5e-106 388.3 354 60.2
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 6.5e-106 388.3 405 56.0
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.1e-105 387.5 346 60.7
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 4.2e-105 385.6 354 59.9
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 4.2e-105 385.6 348 60.9
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 7.2e-105 384.8 354 59.9
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.6e-104 383.6 338 60.4
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 8.0e-104 381.3 352 59.4
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.3e-103 379.8 349 60.5
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 8.8e-103 377.9 333 60.7
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.2e-102 377.5 345 59.4
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 2.6e-102 376.3 358 58.1
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 3.3e-102 375.9 337 59.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 7.5e-102 374.8 385 56.1
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.7e-101 373.6 413 52.8
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.8e-101 372.9 345 59.7
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.7e-101 372.5 314 65.6
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.1e-100 370.9 364 56.9
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 2.4e-100 369.8 353 58.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 5.3e-100 368.6 335 59.7
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 5.3e-100 368.6 373 56.3
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.6e-99 367.1 294 68.4
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 5.9e-99 365.2 344 59.6
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.9e-98 362.8 563 43.9
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 3.8e-98 362.5 352 56.2
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.5e-98 361.7 343 60.6
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 6.5e-98 361.7 456 50.2
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.2e-97 358.2 342 59.6
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.6e-96 357.1 333 59.2
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.0e-95 354.4 293 65.9
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 8.8e-95 351.3 304 64.8
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.5e-94 350.5 277 68.6
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.3e-93 347.4 311 63.7
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.7e-93 347.1 353 55.5
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.8e-92 343.6 304 63.5
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.0e-92 341.7 299 64.9
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.0e-92 341.7 335 58.8
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 7.0e-92 341.7 304 63.8
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 2.0e-91 340.1 310 61.0
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.7e-91 339.7 299 64.5
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 7.7e-91 338.2 294 61.9
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.2e-90 336.7 298 61.1
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 8.5e-90 334.7 302 62.6
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.5e-89 334.0 302 62.3
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.9e-89 333.6 334 56.9
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 5.2e-87 325.5 333 56.5
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.2e-83 314.3 365 52.3
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.7e-82 310.5 347 51.3
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.5e-81 307.4 430 47.2
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.9e-81 307.0 269 61.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-81 305.8 227 72.2
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 3.7e-77 292.7 258 63.2
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.4e-76 290.0 345 49.3
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.1e-73 281.2 353 49.6
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 5.6e-73 278.9 305 53.4
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.8e-72 276.6 349 48.7
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 3.1e-71 273.1 300 52.0
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 4.0e-71 272.7 319 51.7
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.2e-70 271.2 317 50.5
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 7.0e-68 261.9 256 58.2
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.3e-57 226.5 243 55.1
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 2.1e-56 223.8 164 69.5
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 8.9e-55 218.4 332 44.3
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 9.9e-54 214.9 161 69.6
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.3e-53 214.5 198 63.6
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 5.4e-52 209.1 158 68.4
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 7.8e-51 205.3 201 53.2
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.8e-47 194.1 331 36.3
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 9.0e-47 191.8 376 35.1
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 2.9e-45 186.8 266 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 3.8e-45 186.4 317 39.7
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 7.1e-44 182.2 128 71.9
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.1e-43 180.6 172 55.2
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.3e-42 177.9 194 54.1
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.1e-41 174.9 313 38.3
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 4.8e-40 169.5 115 74.8
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 4.8e-40 169.5 115 74.8
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-36 157.9 139 63.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 7.4e-33 145.6 235 42.6
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 8.4e-29 132.1 104 63.5
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.4e-28 130.6 228 41.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.5e-28 129.4 134 59.0
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.4e-25 119.0 133 51.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 4.8e-24 116.3 141 51.1
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-23 114.8 152 45.4
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 4.2e-20 103.2 103 57.3
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.3e-18 98.2 325 31.4
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 6.3e-16 89.4 86 54.7
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 8.2e-16 89.0 123 45.5
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 3.9e-10 70.1 57 66.7
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.3e-08 65.1 246 26.8
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 4.5e-06 56.6 91 47.3
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 4.5e-06 56.6 91 47.3
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 5.9e-06 56.2 87 48.3
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 7.7e-06 55.8 70 48.6
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 7.7e-06 55.8 72 47.2


User provided reference genes

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