Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.8e-34 148.7 72 100.0
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 4.8e-32 140.6 71 94.4
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.1e-31 139.4 71 91.5
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.8e-31 138.7 71 93.0
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.4e-31 138.3 71 93.0
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 6.9e-31 136.7 69 92.8
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 6.9e-31 136.7 71 91.5
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 9.0e-31 136.3 71 88.7
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 9.0e-31 136.3 69 91.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 2.0e-30 135.2 71 88.7
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.0e-30 135.2 71 90.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 3.4e-30 134.4 71 90.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 4.5e-30 134.0 71 87.3
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 5.8e-30 133.7 71 88.7
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 7.6e-30 133.3 72 84.7
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 7.6e-30 133.3 72 87.5
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.0e-29 132.9 71 87.3
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.0e-29 132.9 72 86.1
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 84.5
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 88.7
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 88.7
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 88.7
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.3e-29 132.5 72 86.1
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.7e-29 132.1 69 88.4
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.2e-29 131.7 71 87.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.2e-29 131.7 72 86.1
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.9e-29 131.3 69 87.0
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.8e-29 131.0 69 88.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.8e-29 131.0 71 87.3
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 3.8e-29 131.0 73 83.6
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 81.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 4.9e-29 130.6 71 87.3
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 87.5
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 87.5
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-29 130.6 72 87.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 4.9e-29 130.6 71 87.3
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.1e-28 129.4 70 88.6
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-28 129.4 70 88.6
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.1e-28 129.4 72 84.7
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 87.5
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.4e-28 129.0 71 85.9
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.4e-28 129.0 71 85.9
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.4e-28 129.0 71 85.9
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.4e-28 129.0 71 85.9
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 87.5
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 88.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 72 83.3
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 72 83.3
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 85.9
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 85.9
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.9e-28 128.6 72 87.5
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 72 84.7
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.9e-28 128.6 70 85.7
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.9e-28 128.6 70 87.1
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.9e-28 128.6 72 84.7
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.5e-28 128.3 71 84.5
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.5e-28 128.3 73 79.5
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.5e-28 128.3 73 79.5
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 3.2e-28 127.9 72 84.7
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 3.2e-28 127.9 72 84.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 3.2e-28 127.9 69 84.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.2e-28 127.9 71 80.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 3.2e-28 127.9 71 83.1
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.2e-28 127.5 70 84.3
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.2e-28 127.5 69 82.6
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.2e-28 127.5 74 83.8
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 4.2e-28 127.5 72 84.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 80.3
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-28 127.1 72 86.1
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-28 127.1 72 86.1
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.5e-28 127.1 72 86.1
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 84.5
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.5e-28 127.1 71 85.9
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.1e-28 126.7 71 84.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.3e-28 126.3 72 84.7
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 9.3e-28 126.3 72 84.7
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-27 125.9 65 87.7
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.2e-27 125.9 72 84.7
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.2e-27 125.9 72 84.7
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.6e-27 125.6 72 84.7
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 3.5e-27 124.4 71 83.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.5e-27 124.4 66 86.4
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 3.5e-27 124.4 71 84.5
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 4.6e-27 124.0 67 83.6
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.6e-27 124.0 72 84.7
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 6.0e-27 123.6 72 79.2
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.0e-26 122.9 71 80.3
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.0e-26 122.9 70 80.0
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.3e-26 122.5 69 82.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 78.9
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.3e-26 122.5 71 84.5
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.3e-26 122.5 72 77.8
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 71 80.3
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 69 81.2
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.8e-26 122.1 69 81.2
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 80.3
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 3.0e-26 121.3 71 81.7
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 3.9e-26 120.9 71 77.5
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.9e-26 120.9 91 68.1
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.9e-26 120.9 77 76.6
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 5.1e-26 120.6 69 82.6
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.1e-26 120.6 72 77.8
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 6.7e-26 120.2 70 80.0
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 83.1
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.1e-25 119.4 93 63.4
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-25 119.4 72 79.2
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-25 119.4 72 79.2
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 62 87.1
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 4.3e-25 117.5 71 77.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.6e-24 115.5 72 76.4
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.6e-24 115.5 99 59.6
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.1e-24 115.2 70 75.7
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 73.2
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 3.7e-24 114.4 61 86.9
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 6.2e-24 113.6 95 60.0
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 6.2e-24 113.6 101 58.4
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 8.2e-24 113.2 62 79.0
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-23 112.8 64 82.8
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-23 112.5 64 82.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-23 112.5 64 82.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.4e-23 112.5 64 82.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.4e-23 112.5 64 82.8
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.4e-23 112.5 70 74.3
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.4e-23 112.5 64 82.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.8e-23 112.1 64 81.2
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.1e-23 111.3 60 86.7
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.1e-23 111.3 60 86.7
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.1e-23 111.3 60 86.7
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.1e-23 111.3 60 86.7
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.1e-23 111.3 60 86.7
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.1e-23 111.3 60 86.7
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 3.1e-23 111.3 61 78.7
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 4.0e-23 110.9 71 70.4
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 5.3e-23 110.5 71 70.4
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.0e-22 108.6 61 75.4
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 3.4e-22 107.8 71 71.8
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 7.6e-22 106.7 66 74.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.0e-21 106.3 56 85.7
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 56 85.7
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.2e-21 105.1 81 64.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 3.8e-21 104.4 57 89.5
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 6.5e-21 103.6 64 76.6
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 8.4e-21 103.2 56 83.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.1e-20 102.8 56 83.9
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-20 102.1 71 69.0
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.9e-20 102.1 56 85.7
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.5e-20 101.7 57 77.2
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.2e-20 100.9 56 80.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 5.5e-20 100.5 62 75.8
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 5.5e-20 100.5 56 78.6
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.3e-20 99.8 56 85.7
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 9.3e-20 99.8 56 82.1
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 9.3e-20 99.8 58 75.9
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.7e-19 98.2 61 73.8
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.3e-18 95.9 56 80.4
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.3e-18 95.1 56 76.8
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 3.0e-18 94.7 56 78.6
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 3.0e-18 94.7 90 54.4
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 3.9e-18 94.4 125 44.0
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 8.7e-18 93.2 56 75.0
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.5e-17 92.4 47 85.1
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.5e-17 92.4 66 63.6
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 2.2e-16 88.6 56 73.2
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.8e-16 88.2 56 69.6
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-15 85.9 58 70.7
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.4e-15 85.1 56 64.3
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 3.1e-15 84.7 52 75.0
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.1e-15 84.3 62 58.1
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 9.0e-15 83.2 65 53.8
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 9.0e-15 83.2 56 71.4
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.0e-13 79.7 58 62.1
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.7e-13 79.0 40 90.0
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 6.5e-13 77.0 63 57.1
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 3.2e-12 74.7 45 82.2
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.2e-12 74.3 58 63.8
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.4e-12 73.2 55 61.8
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.4e-12 73.2 46 76.1
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 4.6e-11 70.9 38 78.9
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 4.6e-11 70.9 40 80.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.3e-09 64.3 40 75.0
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.1e-07 59.7 51 52.9
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.4e-07 59.3 32 81.2
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 4.5e-06 54.3 54 42.6


User provided reference genes

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