Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019135 Sechium edule HOM05D009340 ORTHO05D000038 1.5e-113 412.9 212 100.0
Sed0011285 Sechium edule HOM05D009340 ORTHO05D000038 1.4e-47 193.7 212 49.1
Sed0000276 Sechium edule HOM05D009340 ORTHO05D000038 5.7e-41 171.8 223 46.6
Sed0015169 Sechium edule HOM05D009340 ORTHO05D000038 2.1e-35 153.3 223 46.2
MELO3C009075.2 Cucumis melo HOM05D000082 ORTHO05D000038 1.6e-14 84.0 152 31.6
Sed0002646 Sechium edule HOM05D000082 ORTHO05D000038 2.0e-14 83.6 205 27.8
MELO3C017919.2 Cucumis melo HOM05D000082 ORTHO05D000038 2.3e-13 80.1 58 53.4
CsaV3_7G001950 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.3e-12 76.3 148 32.4
CsaV3_7G002010 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.3e-12 76.3 148 32.4
Sed0000724 Sechium edule HOM05D000082 ORTHO05D000038 4.3e-12 75.9 209 25.8
MELO3C024019.2 Cucumis melo HOM05D010671 ORTHO05D025067 9.5e-12 74.7 155 29.7
CsaV3_2G036020 Cucumis sativus L. HOM05D000082 ORTHO05D014613 2.8e-11 73.2 216 25.5
Sed0025763 Sechium edule HOM05D000082 ORTHO05D000038 2.3e-10 70.1 144 29.2
MELO3C008980.2 Cucumis melo HOM05D000082 ORTHO05D000038 3.0e-10 69.7 60 50.0
ClCG04G000540 Citrullus lanatus HOM05D000082 ORTHO05D000038 5.2e-10 68.9 42 61.9
CsaV3_1G039540 Cucumis sativus L. HOM05D000001 ORTHO05D000003 5.2e-10 68.9 147 27.9
MELO3C023130.2 Cucumis melo HOM05D000082 ORTHO05D000038 2.0e-09 67.0 54 53.7
Cpa.g.sc106.69 Carica papaya HOM05D027758 ORTHO05D028536 1.3e-08 64.3 203 23.6
CsaV3_2G011420 Cucumis sativus L. HOM05D000082 ORTHO05D000038 2.2e-08 63.5 209 25.8
Lalb_Chr11g0067361 Lupinus albus HOM05D000082 ORTHO05D000038 2.9e-08 63.2 49 51.0
Thhalv10029381m.g Eutrema salsugineum HOM05D008302 ORTHO05D000038 4.9e-08 62.4 54 51.9
CsaV3_4G001200 Cucumis sativus L. HOM05D000082 ORTHO05D000038 8.3e-08 61.6 40 60.0
Eucgr.C02349 Eucalyptus grandis HOM05D000082 ORTHO05D000038 8.3e-08 61.6 49 49.0
Sed0011597 Sechium edule HOM05D000082 ORTHO05D000038 8.3e-08 61.6 56 41.1
Sed0020057 Sechium edule HOM05D000082 ORTHO05D000038 8.3e-08 61.6 59 44.1
MELO3C003583.2 Cucumis melo HOM05D000082 ORTHO05D000038 1.1e-07 61.2 207 24.6
CANSAT11G0577 Cannabis sativa HOM05D000082 ORTHO05D000038 1.4e-07 60.8 52 44.2
CANSAT56G4434 Cannabis sativa HOM05D000082 ORTHO05D000038 1.4e-07 60.8 52 44.2
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 1.4e-07 60.8 47 55.3
CDE09G0987 Ceratophyllum demersum HOM05D000257 ORTHO05D008920 1.8e-07 60.5 50 50.0
A02p31260 Brassica napus HOM05D009340 ORTHO05D011957 2.4e-07 60.1 57 45.6
BraA02t08114Z Brassica rapa HOM05D009340 ORTHO05D011957 2.4e-07 60.1 57 45.6
BraA02t08129Z Brassica rapa HOM05D009340 ORTHO05D011957 2.4e-07 60.1 57 45.6
arahy.Tifrunner.gnm1.ann1.8992SQ Arachis hypogaea HOM05D000082 ORTHO05D000038 3.2e-07 59.7 51 49.0
Cpa.g.sc114.53 Carica papaya HOM05D022881 ORTHO05D000038 3.2e-07 59.7 50 44.0
CDE02G4336 Ceratophyllum demersum HOM05D000257 ORTHO05D008920 3.2e-07 59.7 50 50.0
CBR_g19973 Chara braunii HOM05D000082 ORTHO05D000038 3.2e-07 59.7 54 46.3
DCAR_002542 Daucus carota HOM05D000086 ORTHO05D002912 3.2e-07 59.7 49 53.1
BcaC03g16954 Brassica carinata HOM05D009340 ORTHO05D011957 4.1e-07 59.3 57 45.6
C02p48600 Brassica napus HOM05D009340 ORTHO05D011957 4.1e-07 59.3 57 45.6
BolC2t10894H Brassica oleracea HOM05D009340 ORTHO05D011957 4.1e-07 59.3 57 45.6
BolC2t10896H Brassica oleracea HOM05D009340 ORTHO05D011957 4.1e-07 59.3 57 45.6
BolC2t10935H Brassica oleracea HOM05D009340 ORTHO05D011957 4.1e-07 59.3 57 45.6
Cpa.g.sc114.52 Carica papaya HOM05D022881 ORTHO05D018908 4.1e-07 59.3 45 46.7
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 4.1e-07 59.3 48 52.1
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 4.1e-07 59.3 57 50.9
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 4.1e-07 59.3 57 50.9
Duzib114G0003 Durio zibethinus HOM05D000082 ORTHO05D000038 4.1e-07 59.3 44 61.4
Sabra01G0061600 Salix brachista HOM05D000082 ORTHO05D050571 4.1e-07 59.3 50 44.0
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 4.1e-07 59.3 48 54.2
Cpa.g.sc231.4 Carica papaya HOM05D000082 ORTHO05D018908 5.4e-07 58.9 120 30.0
Cpa.g.sc26.126 Carica papaya HOM05D000082 ORTHO05D000038 5.4e-07 58.9 61 44.3
CiPaw.03G225700 Carya illinoinensis HOM05D000082 ORTHO05D000038 5.4e-07 58.9 48 45.8
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 7.0e-07 58.5 47 55.3
BolC2t10900H Brassica oleracea HOM05D009340 ORTHO05D011957 7.0e-07 58.5 57 45.6
CANSAT80G2402 Cannabis sativa HOM05D000086 ORTHO05D000983 7.0e-07 58.5 52 42.3
CDE08G1589 Ceratophyllum demersum HOM05D001163 ORTHO05D001769 7.0e-07 58.5 47 48.9
DCAR_002543 Daucus carota HOM05D000086 ORTHO05D002912 7.0e-07 58.5 50 52.0
DCAR_028618 Daucus carota HOM05D000086 ORTHO05D002912 7.0e-07 58.5 50 52.0
Thhalv10029147m.g Eutrema salsugineum HOM05D008302 ORTHO05D016783 7.0e-07 58.5 54 50.0
FvH4_4g31700 Fragaria vesca HOM05D000082 ORTHO05D000038 7.0e-07 58.5 59 37.3
Sp4g17280 Schrenkiella parvula HOM05D000157 ORTHO05D000691 7.0e-07 58.5 49 44.9
Aa31sc36G20 Aethionema arabicum HOM05D012539 ORTHO05D000038 9.2e-07 58.2 50 50.0
Cpa.g.sc26.92 Carica papaya HOM05D000082 ORTHO05D018908 9.2e-07 58.2 47 48.9
AUR62018985 Chenopodium quinoa HOM05D000157 ORTHO05D043999 9.2e-07 58.2 52 42.3
Thhalv10016848m.g Eutrema salsugineum HOM05D000157 ORTHO05D000691 9.2e-07 58.2 49 44.9
FvH4_1g06030 Fragaria vesca HOM05D010557 ORTHO05D000038 9.2e-07 58.2 58 43.1
FAN19G2264 Fragaria x ananassa HOM05D010557 ORTHO05D000038 9.2e-07 58.2 58 43.1
PGR024G0001 Punica granatum HOM05D000082 ORTHO05D030517 9.2e-07 58.2 52 44.2
Aqoxy2G03593 Aquilegia oxysepala HOM05D031911 ORTHO05D031281 1.2e-06 57.8 52 42.3
Cpa.g.sc20.15 Carica papaya HOM05D000082 ORTHO05D018908 1.2e-06 57.8 120 30.0
Cfa003188 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.2e-06 57.8 47 46.8
MELO3C020462.2 Cucumis melo HOM05D000082 ORTHO05D000038 1.2e-06 57.8 47 44.7
FAN11G1126 Fragaria x ananassa HOM05D000157 ORTHO05D001065 1.2e-06 57.8 53 43.4
FAN28G1239 Fragaria x ananassa HOM05D010557 ORTHO05D000038 1.2e-06 57.8 58 43.1
SGA_v2.0_scaffold37G14579 Striga asiatica HOM05D000082 ORTHO05D000038 1.2e-06 57.8 53 45.3
TWI31G0837 Tripterygium wilfordii HOM05D000157 ORTHO05D001065 1.2e-06 57.8 53 39.6
Atru.chr3.4166 Acer truncatum HOM05D000086 ORTHO05D000311 1.6e-06 57.4 56 42.9
AL1G67430 Arabidopsis lyrata HOM05D009340 ORTHO05D011957 1.6e-06 57.4 49 44.9
Haze_25822 Corylus avellana HOM05D000082 ORTHO05D000038 1.6e-06 57.4 55 41.8
Lsat_1_v5_gn_2_129661 Lactuca sativa HOM05D000086 ORTHO05D000311 1.6e-06 57.4 54 42.6
Os11g0113900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 1.6e-06 57.4 51 47.1
Hund23471 Selenicereus undatus HOM05D001172 ORTHO05D001128 1.6e-06 57.4 47 44.7
Zm00001eb098900 Zea mays HOM05D000086 ORTHO05D000983 1.6e-06 57.4 49 46.9
Aqoxy2G01614 Aquilegia oxysepala HOM05D000086 ORTHO05D000311 2.0e-06 57.0 51 41.2
AL1G50090 Arabidopsis lyrata HOM05D000157 ORTHO05D000691 2.0e-06 57.0 46 45.7
DCAR_005881 Daucus carota HOM05D000086 ORTHO05D000311 2.0e-06 57.0 56 42.9
Duzib041G0665 Durio zibethinus HOM05D000082 ORTHO05D000038 2.0e-06 57.0 46 58.7
Duzib114G0480 Durio zibethinus HOM05D000082 ORTHO05D000038 2.0e-06 57.0 44 56.8
ECA233G2881 Erigeron canadensis HOM05D000082 ORTHO05D000038 2.0e-06 57.0 51 43.1
Migut.G00129 Erythranthe guttata HOM05D000157 ORTHO05D000311 2.0e-06 57.0 59 30.5
Gohir.A06G045100 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.0e-06 57.0 44 56.8
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 2.0e-06 57.0 47 51.1
Medtr3g025510 Medicago truncatula HOM05D000082 ORTHO05D000038 2.0e-06 57.0 50 48.0
Sp6g08430 Schrenkiella parvula HOM05D000157 ORTHO05D000691 2.0e-06 57.0 47 40.4
Sc04g0001110 Simmondsia chinensis HOM05D000082 ORTHO05D000038 2.0e-06 57.0 58 41.4
Sc04g0001120 Simmondsia chinensis HOM05D000082 ORTHO05D000038 2.0e-06 57.0 51 47.1
Thecc.01G166200 Theobroma cacao HOM05D000086 ORTHO05D001065 2.0e-06 57.0 46 45.7
AT3G11110 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 2.7e-06 56.6 55 40.0
A02p31190 Brassica napus HOM05D009340 ORTHO05D011957 2.7e-06 56.6 57 43.9
AUR62021418 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.7e-06 56.6 44 50.0
MELO3C012012.2 Cucumis melo HOM05D000086 ORTHO05D000983 2.7e-06 56.6 54 38.9
CsaV3_5G031720 Cucumis sativus L. HOM05D000086 ORTHO05D000983 2.7e-06 56.6 54 38.9
Manes.02G051900 Manihot esculenta HOM05D000082 ORTHO05D000038 2.7e-06 56.6 48 43.8
Rhsim06G0013000 Rhododendron simsii HOM05D000086 ORTHO05D005495 2.7e-06 56.6 49 40.8
Sabra12G0056000 Salix brachista HOM05D000086 ORTHO05D000983 2.7e-06 56.6 52 42.3
Sed0001847 Sechium edule HOM05D000086 ORTHO05D000983 2.7e-06 56.6 51 45.1
Sc04g0001100 Simmondsia chinensis HOM05D000082 ORTHO05D000038 2.7e-06 56.6 58 43.1
Zm00001eb195260 Zea mays HOM05D000157 ORTHO05D001065 2.7e-06 56.6 55 38.2
Aa31LG9G16210 Aethionema arabicum HOM05D000157 ORTHO05D000691 3.5e-06 56.2 46 43.5
Aqoxy1G03521 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 3.5e-06 56.2 46 50.0
Carub.0001s3296 Capsella rubella HOM05D000157 ORTHO05D000691 3.5e-06 56.2 46 43.5
CiPaw.02G194000 Carya illinoinensis HOM05D000157 ORTHO05D000311 3.5e-06 56.2 59 39.0
Ca_02676_v3 Cicer arietinum L. HOM05D024754 ORTHO05D000038 3.5e-06 56.2 49 53.1
MELO3C002249.2 Cucumis melo HOM05D000086 ORTHO05D000983 3.5e-06 56.2 51 43.1
MELO3C018366.2 Cucumis melo HOM05D000157 ORTHO05D000311 3.5e-06 56.2 57 40.4
CsaV3_1G008330 Cucumis sativus L. HOM05D000086 ORTHO05D000983 3.5e-06 56.2 51 43.1
Manes.02G052000 Manihot esculenta HOM05D000082 ORTHO05D000038 3.5e-06 56.2 48 43.8
Nitab4.5_0003568g0020 Nicotiana tabacum HOM05D000157 ORTHO05D004871 3.5e-06 56.2 47 48.9
Phvul.005G065200 Phaseolus vulgaris HOM05D000354 ORTHO05D001065 3.5e-06 56.2 57 42.1
PGR142G0636 Punica granatum HOM05D000082 ORTHO05D030517 3.5e-06 56.2 53 41.5
PGR142G1050 Punica granatum HOM05D000082 ORTHO05D000038 3.5e-06 56.2 48 45.8
RcHm_v2.0_Chr2g0091781 Rosa chinensis HOM05D000082 ORTHO05D000038 3.5e-06 56.2 59 39.0
SMO145G0233 Selaginella moellendorffii HOM05D000157 ORTHO05D000311 3.5e-06 56.2 58 41.4
THA.LOC104812538 Tarenaya hassleriana HOM05D010088 ORTHO05D012586 3.5e-06 56.2 47 44.7
THA.LOC104812700 Tarenaya hassleriana HOM05D000157 ORTHO05D000691 3.5e-06 56.2 47 42.6
TPR.G18937 Trifolium pratense HOM05D000082 ORTHO05D000038 3.5e-06 56.2 52 46.2
Aa31LG3G10910 Aethionema arabicum HOM05D014881 ORTHO05D014332 4.6e-06 55.8 43 46.5
Aa31LG6G8710 Aethionema arabicum HOM05D000157 ORTHO05D000691 4.6e-06 55.8 46 45.7
A08p30030 Brassica napus HOM05D007117 ORTHO05D000038 4.6e-06 55.8 50 44.0
BraA08t34938Z Brassica rapa HOM05D007117 ORTHO05D000038 4.6e-06 55.8 50 44.0
CDE02G3866 Ceratophyllum demersum HOM05D000086 ORTHO05D002912 4.6e-06 55.8 48 52.1
ClCG01G014020 Citrullus lanatus HOM05D000086 ORTHO05D000983 4.6e-06 55.8 51 43.1
Gorai.006G120600 Gossypium raimondii HOM05D009314 ORTHO05D010771 4.6e-06 55.8 57 35.1
PSO170G0598 Papaver somniferum HOM05D000086 ORTHO05D000311 4.6e-06 55.8 51 45.1
Phvul.L002202 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 4.6e-06 55.8 59 44.1
Sabra09G0056000 Salix brachista HOM05D000157 ORTHO05D000311 4.6e-06 55.8 49 44.9
SHI01076 Sapria himalayana HOM05D000616 ORTHO05D000038 4.6e-06 55.8 61 39.3
Sed0005679 Sechium edule HOM05D000157 ORTHO05D000691 4.6e-06 55.8 46 41.3
TWI09G0681 Tripterygium wilfordii HOM05D066252 ORTHO05D000038 4.6e-06 55.8 43 48.8
unitig_749.g14358 Utricularia gibba HOM05D000086 ORTHO05D003012 4.6e-06 55.8 47 46.8
HPP92_019417 Vanilla planifolia HOM05D000086 ORTHO05D002912 4.6e-06 55.8 46 50.0
Aqoxy1G02693 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 5.9e-06 55.5 51 43.1
AT1G35330 Arabidopsis thaliana HOM05D000157 ORTHO05D000691 5.9e-06 55.5 46 43.5
Carub.0006s3133 Capsella rubella HOM05D008302 ORTHO05D000038 5.9e-06 55.5 52 42.3
CiPaw.04G158500 Carya illinoinensis HOM05D010557 ORTHO05D000038 5.9e-06 55.5 47 42.6
ClCG07G004370 Citrullus lanatus HOM05D000086 ORTHO05D000311 5.9e-06 55.5 46 45.7
COL.COLO4_33241 Corchorus olitorius HOM05D009314 ORTHO05D010771 5.9e-06 55.5 54 35.2
CsaV3_5G010310 Cucumis sativus L. HOM05D000157 ORTHO05D000311 5.9e-06 55.5 56 42.9
FvH4_3g20200 Fragaria vesca HOM05D000157 ORTHO05D001065 5.9e-06 55.5 53 41.5
FAN07G1670 Fragaria x ananassa HOM05D000082 ORTHO05D000038 5.9e-06 55.5 51 39.2
FAN23G1102 Fragaria x ananassa HOM05D010557 ORTHO05D000038 5.9e-06 55.5 60 40.0
FAN26G1861 Fragaria x ananassa HOM05D010557 ORTHO05D000038 5.9e-06 55.5 60 40.0
FAN26G2787 Fragaria x ananassa HOM05D010557 ORTHO05D000038 5.9e-06 55.5 60 40.0
Gohir.D06G045600 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.9e-06 55.5 44 56.8
HanXRQChr12g0366841 Helianthus annuus HOM05D000082 ORTHO05D000038 5.9e-06 55.5 49 44.9
Hma1.2p1_0176F.1_g077730 Hydrangea macrophylla HOM05D000086 ORTHO05D000983 5.9e-06 55.5 52 40.4
Lsat_1_v5_gn_9_62341 Lactuca sativa HOM05D000086 ORTHO05D000311 5.9e-06 55.5 56 37.5
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 5.9e-06 55.5 45 48.9
PSO017G0017 Papaver somniferum HOM05D000157 ORTHO05D000311 5.9e-06 55.5 49 44.9
Peaxi162Scf00129g00092 Petunia axillaris HOM05D000086 ORTHO05D000983 5.9e-06 55.5 51 41.2
Phvul.005G028032 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 5.9e-06 55.5 59 44.1
Phvul.L001902 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 5.9e-06 55.5 59 44.1
Zm00001eb164680 Zea mays HOM05D000086 ORTHO05D008998 5.9e-06 55.5 44 45.5
Zm00001eb340160 Zea mays HOM05D000086 ORTHO05D000311 5.9e-06 55.5 48 45.8
Actinidia16927 Actinidia chinensis HOM05D000086 ORTHO05D000983 7.8e-06 55.1 51 41.2
AT4G00305 Arabidopsis thaliana HOM05D000341 ORTHO05D000557 7.8e-06 55.1 50 48.0
EL10Ac1g01121 Beta vulgaris HOM05D000157 ORTHO05D000691 7.8e-06 55.1 52 38.5
CARHR034130 Cardamine hirsuta HOM05D000157 ORTHO05D000691 7.8e-06 55.1 46 43.5
CARHR129160 Cardamine hirsuta HOM05D000157 ORTHO05D000691 7.8e-06 55.1 46 43.5
AUR62021416 Chenopodium quinoa HOM05D000082 ORTHO05D000038 7.8e-06 55.1 44 47.7
CsaV3_2G001950 Cucumis sativus L. HOM05D000082 ORTHO05D000038 7.8e-06 55.1 45 46.7
Duzib205G1250 Durio zibethinus HOM05D000082 ORTHO05D000038 7.8e-06 55.1 48 43.8
Duzib205G1432 Durio zibethinus HOM05D000082 ORTHO05D000038 7.8e-06 55.1 48 43.8
ECA246G1421 Erigeron canadensis HOM05D000086 ORTHO05D001065 7.8e-06 55.1 48 41.7
Migut.K01366 Erythranthe guttata HOM05D000086 ORTHO05D001065 7.8e-06 55.1 49 40.8
Glyma.10G289100 Glycine max HOM05D000341 ORTHO05D000557 7.8e-06 55.1 58 44.8
Gohir.A10G205450 Gossypium hirsutum HOM05D000086 ORTHO05D001065 7.8e-06 55.1 45 44.4
Lalb_Chr16g0381781 Lupinus albus HOM05D000082 ORTHO05D000038 7.8e-06 55.1 48 50.0
Nn8g39082 Nelumbo nucifera HOM05D000082 ORTHO05D000038 7.8e-06 55.1 49 42.9
Os01g0311100 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 7.8e-06 55.1 53 37.7
Sed0001179 Sechium edule HOM05D010557 ORTHO05D000038 7.8e-06 55.1 44 45.5
Sc01g0010410 Simmondsia chinensis HOM05D000459 ORTHO05D002912 7.8e-06 55.1 45 53.3
Solyc02g087040.1 Solanum lycopersicum HOM05D000086 ORTHO05D000983 7.8e-06 55.1 51 41.2
Sopen02g031800 Solanum pennellii HOM05D000086 ORTHO05D000983 7.8e-06 55.1 51 41.2
PGSC0003DMG400042968 Solanum tuberosum HOM05D000086 ORTHO05D000983 7.8e-06 55.1 51 41.2
THA.LOC104808919 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 7.8e-06 55.1 51 43.1


User provided reference genes

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