Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.0e-96 354.8 179 100.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 3.2e-69 265.4 169 82.8
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 5.6e-66 254.6 170 80.0
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.4e-64 249.2 160 83.1
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 7.6e-55 217.6 170 65.9
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.1e-53 213.8 172 64.5
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 5.5e-53 211.5 174 65.5
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.3e-53 210.7 179 63.1
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 9.3e-53 210.7 177 63.3
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.7e-52 209.1 162 66.0
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 2.7e-52 209.1 145 71.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 4.6e-52 208.4 145 71.0
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 6.1e-52 208.0 154 70.8
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 6.1e-52 208.0 154 70.8
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.0e-51 207.2 179 62.6
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.0e-51 207.2 179 62.6
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.0e-51 207.2 142 73.9
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 2.3e-51 206.1 175 64.6
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.3e-51 206.1 179 62.6
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.9e-51 205.3 145 73.1
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.1e-50 203.8 179 60.9
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.1e-50 203.8 175 62.9
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 3.3e-50 202.2 165 66.7
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 3.3e-50 202.2 179 59.8
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 4.3e-50 201.8 172 62.2
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 4.3e-50 201.8 177 64.4
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.7e-50 201.4 172 64.0
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.3e-49 200.3 172 65.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.6e-49 199.9 150 70.0
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-49 199.1 174 62.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.7e-49 198.7 176 63.1
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 6.3e-49 198.0 177 62.7
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 6.3e-49 198.0 150 69.3
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 6.3e-49 198.0 183 57.9
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 8.2e-49 197.6 159 65.4
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 8.2e-49 197.6 148 70.3
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.1e-48 197.2 174 63.8
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.1e-48 197.2 168 61.3
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.4e-48 196.8 166 65.1
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.4e-48 196.1 157 66.2
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.4e-48 196.1 169 64.5
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 3.1e-48 195.7 174 59.8
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 3.1e-48 195.7 156 66.0
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.6e-47 192.6 172 60.5
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 5.9e-47 191.4 146 65.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 5.9e-47 191.4 139 69.1
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-46 189.9 181 58.6
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.2e-46 189.5 179 55.9
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.2e-46 189.5 166 63.3
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 6.5e-46 188.0 205 52.7
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 8.5e-46 187.6 177 58.2
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 8.5e-46 187.6 168 58.3
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 8.5e-46 187.6 179 54.2
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.1e-45 187.2 181 54.1
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.4e-45 186.8 150 67.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.4e-45 186.8 158 62.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.4e-45 186.8 181 55.8
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.4e-45 186.8 150 61.3
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.9e-45 186.4 170 56.5
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.2e-45 185.7 160 61.2
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 4.2e-45 185.3 169 57.4
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 4.2e-45 185.3 148 63.5
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 5.5e-45 184.9 164 59.1
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 7.2e-45 184.5 146 65.1
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 9.4e-45 184.1 170 55.9
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.6e-44 183.3 164 58.5
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.1e-44 183.0 170 62.9
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 2.7e-44 182.6 149 60.4
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.6e-44 182.2 148 64.9
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 4.6e-44 181.8 174 56.3
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 7.9e-44 181.0 168 54.8
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 7.9e-44 181.0 168 56.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 7.9e-44 181.0 172 57.6
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.0e-43 180.6 169 56.2
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.0e-43 180.6 169 56.2
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.3e-43 179.5 151 62.3
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 6.7e-43 177.9 183 54.6
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 8.8e-43 177.6 149 61.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-42 177.2 149 61.1
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-42 177.2 150 61.3
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.1e-42 177.2 122 72.1
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-42 176.4 149 60.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.0e-42 176.4 239 46.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 2.5e-42 176.0 174 54.6
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.5e-42 176.0 122 71.3
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 3.3e-42 175.6 169 55.6
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.3e-42 175.6 144 62.5
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 4.3e-42 175.3 151 61.6
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 4.3e-42 175.3 152 61.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 5.7e-42 174.9 140 61.4
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 7.4e-42 174.5 179 54.2
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 7.4e-42 174.5 144 61.1
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 9.7e-42 174.1 149 59.7
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.7e-41 173.3 168 55.4
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.4e-40 170.2 159 59.7
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.1e-40 169.1 152 58.6
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-39 167.2 177 53.7
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 5.9e-39 164.9 172 51.7
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 5.9e-39 164.9 153 60.1
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.0e-38 164.1 146 58.2
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 3.8e-38 162.2 185 51.4
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.8e-38 162.2 121 66.1
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.1e-37 160.6 163 57.1
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.6e-36 156.8 162 53.1
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 3.6e-36 155.6 144 54.9
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 6.1e-36 154.8 141 57.4
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 6.1e-36 154.8 127 66.9
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 7.9e-36 154.5 143 54.5
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.8e-35 153.3 171 49.7
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.8e-35 153.3 143 53.1
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 3.9e-35 152.1 174 50.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 2.0e-34 149.8 120 58.3
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 4.4e-34 148.7 228 41.2
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.7e-33 145.6 134 55.2
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.3e-33 144.8 120 56.7
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.8e-32 143.3 124 58.1
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-31 140.6 153 52.9
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.5e-31 140.2 117 59.8
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 5.9e-31 138.3 163 47.2
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.2e-29 132.1 115 60.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.7e-28 129.4 155 45.2
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.7e-28 129.4 155 45.2
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.5e-26 123.6 148 45.9
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.5e-26 123.6 266 32.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.4e-26 122.1 149 45.6
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 5.7e-26 121.7 132 52.3
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 5.7e-26 121.7 132 52.3
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.8e-24 116.7 100 54.0
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.5e-23 112.5 177 41.2
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.8e-22 109.0 134 42.5
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-20 103.6 103 52.4
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.0e-19 99.0 111 52.3
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.2e-18 97.4 169 39.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 6.3e-17 91.7 115 46.1
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.8e-14 82.4 91 52.7
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.5e-13 78.6 102 49.0
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 5.5e-13 78.6 86 54.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 7.2e-13 78.2 102 49.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 7.2e-13 78.2 102 48.0
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 9.4e-13 77.8 102 49.0
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 1.6e-12 77.0 98 50.0
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 1.6e-12 77.0 98 50.0
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.3e-09 67.4 58 62.1
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 2.2e-09 66.6 48 68.8


User provided reference genes

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