Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.6e-104 382.1 196 100.0
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.4e-72 275.0 206 76.7
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 6.0e-69 264.6 205 74.1
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 7.8e-69 264.2 206 72.8
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 9.5e-59 230.7 207 67.1
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.5e-40 170.2 211 53.1
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 7.6e-40 167.9 211 53.6
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.2e-38 162.5 209 51.7
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.2e-37 160.6 225 48.4
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 7.9e-37 157.9 215 50.2
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.0e-36 157.5 205 51.7
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.5e-35 153.7 207 49.8
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 2.5e-35 152.9 212 48.1
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 5.6e-35 151.8 207 50.7
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 9.6e-35 151.0 207 51.7
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.6e-34 150.2 210 47.1
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 8.1e-34 147.9 209 50.2
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 8.1e-34 147.9 210 52.4
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 3.1e-33 146.0 210 48.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 9.0e-33 144.4 211 49.3
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 9.0e-33 144.4 211 47.4
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.5e-32 143.7 212 49.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.5e-32 142.1 210 47.1
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 7.6e-32 141.4 212 49.1
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.7e-31 140.2 201 46.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.7e-31 140.2 209 47.8
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.7e-31 140.2 207 51.2
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.2e-31 139.8 217 45.2
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.8e-31 139.0 207 45.9
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 6.4e-31 138.3 201 46.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.1e-30 137.5 214 46.7
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.1e-30 137.5 214 46.7
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-30 137.1 214 48.1
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-30 136.7 212 47.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.5e-30 136.3 205 46.8
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.5e-30 136.3 216 44.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.2e-30 136.0 212 46.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.2e-30 136.0 209 47.8
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 3.2e-30 136.0 214 46.7
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 4.2e-30 135.6 199 47.2
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.5e-30 135.2 217 46.5
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.2e-29 134.0 207 45.4
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.2e-29 134.0 223 46.6
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.5e-29 132.5 205 45.4
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.8e-28 130.2 223 44.8
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.8e-28 130.2 209 46.4
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.8e-28 130.2 210 46.7
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 3.0e-28 129.4 208 47.6
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 3.9e-28 129.0 210 47.1
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 6.7e-28 128.3 210 46.2
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.7e-28 127.9 202 46.0
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 8.7e-28 127.9 201 45.3
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 8.7e-28 127.9 212 44.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.1e-27 127.5 211 44.5
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.5e-27 127.1 204 44.1
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.9e-27 126.7 205 46.8
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.5e-27 126.3 170 53.5
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 2.5e-27 126.3 234 41.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 3.3e-27 125.9 217 44.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 3.3e-27 125.9 214 46.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 9.6e-27 124.4 224 44.6
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.3e-26 124.0 199 45.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.1e-26 123.2 208 43.8
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 3.7e-26 122.5 211 43.1
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 4.8e-26 122.1 162 50.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 2.4e-25 119.8 218 42.2
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-25 119.8 211 46.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 6.9e-25 118.2 214 40.7
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.9e-25 118.2 212 44.3
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.2e-24 117.5 188 44.7
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-24 117.5 210 45.7
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.6e-24 116.3 210 40.5
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.4e-24 115.9 203 42.4
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 3.4e-24 115.9 225 44.0
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.6e-24 114.8 215 41.4
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.0e-23 114.4 168 46.4
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.7e-23 113.6 211 42.7
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.7e-23 113.6 210 40.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.9e-23 112.1 213 42.7
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.5e-23 111.7 204 44.1
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.5e-23 111.7 204 44.1
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 6.5e-23 111.7 201 44.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 8.4e-23 111.3 202 42.1
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 8.4e-23 111.3 210 42.4
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 8.4e-23 111.3 212 42.9
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-22 110.9 202 41.6
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-22 110.9 202 41.6
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-22 110.9 211 45.5
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-22 110.5 212 42.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.4e-22 110.5 211 42.2
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-22 110.2 216 44.0
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 2.5e-22 109.8 215 40.5
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.2e-22 109.4 187 46.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 4.2e-22 109.0 170 43.5
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 5.5e-22 108.6 162 48.1
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 5.5e-22 108.6 198 43.4
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 9.3e-22 107.8 193 39.4
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.7e-21 106.3 139 48.9
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.5e-21 105.9 207 41.1
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 3.5e-21 105.9 211 39.3
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.5e-21 105.9 196 42.9
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.5e-21 105.9 211 38.9
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 6.0e-21 105.1 211 39.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-20 104.0 211 37.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-20 104.0 211 38.9
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.8e-20 103.6 210 41.4
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.0e-20 102.8 199 37.7
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 3.0e-20 102.8 177 48.0
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.0e-20 102.8 216 39.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-20 102.4 199 37.2
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.9e-20 102.4 199 37.2
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.7e-20 101.3 194 41.2
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-19 100.9 199 37.2
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-19 100.9 199 37.2
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.9e-19 100.1 138 47.1
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-19 99.4 190 38.9
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.7e-19 98.6 168 40.5
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 7.4e-19 98.2 201 40.3
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 7.4e-19 98.2 223 38.1
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-18 97.4 182 37.9
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.2e-18 96.7 136 43.4
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.1e-17 94.4 176 41.5
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.8e-17 93.6 208 38.9
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.8e-17 93.6 141 48.9
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 9.0e-17 91.3 177 42.9
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.0e-16 90.1 210 40.0
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.6e-16 89.7 192 38.5
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 2.6e-16 89.7 221 36.2
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 2.6e-16 89.7 221 36.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.5e-16 89.0 198 36.4
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.5e-16 89.0 128 49.2
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.9e-16 88.6 196 38.8
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 5.9e-16 88.6 200 36.5
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.8e-15 85.9 204 36.3
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.8e-15 85.9 199 37.7
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 6.5e-15 85.1 158 44.3
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 6.5e-15 85.1 203 37.9
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 6.5e-15 85.1 153 45.1
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 8.5e-15 84.7 196 37.2
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.1e-14 84.3 167 41.9
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-14 83.6 162 39.5
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.5e-14 83.2 185 37.3
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.2e-14 82.4 161 36.6
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.2e-14 82.4 165 40.0
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 5.5e-14 82.0 116 50.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 7.2e-14 81.6 158 41.8
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 9.4e-14 81.3 198 38.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.6e-13 80.5 212 35.4
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-13 79.7 207 37.7
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 4.6e-13 79.0 156 39.1
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-12 77.8 165 36.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-12 77.8 165 36.4
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.4e-12 77.4 92 54.3
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 3.0e-12 76.3 207 35.3
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-12 76.3 166 36.1
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 5.1e-12 75.5 205 34.1
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.5e-11 73.2 118 44.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-11 72.8 115 44.3
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.3e-11 72.8 91 52.7
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 4.3e-11 72.4 206 34.5
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.7e-10 70.5 197 32.0
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 8.2e-10 68.2 153 34.6
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.4e-09 67.4 101 44.6
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.8e-09 67.0 151 36.4
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 1.2e-08 64.3 219 33.3
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.2e-08 64.3 137 40.1
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-08 62.8 50 60.0
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 3.4e-08 62.8 161 37.9
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.5e-08 62.4 130 44.6
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 5.9e-08 62.0 183 33.3
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.0e-07 61.2 198 33.3
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 1.4e-06 57.4 100 48.0
Ah.09g230910 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.9e-06 57.0 91 39.6
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 1.9e-06 57.0 201 31.3
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.2e-06 56.2 175 34.9
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 4.2e-06 55.8 75 45.3
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 7.2e-06 55.1 112 42.9
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 9.4e-06 54.7 184 33.2


User provided reference genes

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