Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 1.3e-54 216.1 104 100.0
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 7.9e-36 153.7 104 74.0
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 1.8e-35 152.5 104 75.0
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.3e-34 148.3 104 73.1
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.2e-31 139.8 95 73.7
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 7.9e-20 100.5 104 51.9
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.5e-18 96.3 104 50.0
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 4.8e-17 91.3 105 45.7
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 4.8e-17 91.3 97 48.5
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 6.3e-17 90.9 104 47.1
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 6.3e-17 90.9 104 47.1
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.4e-16 89.7 106 43.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.4e-16 89.7 104 44.2
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.4e-16 89.0 98 50.0
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.1e-16 88.2 104 43.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.1e-16 88.2 105 46.7
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 9.0e-16 87.0 104 44.2
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 1.5e-15 86.3 104 48.1
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.6e-15 85.5 98 49.0
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 1.7e-14 82.8 104 43.3
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 3.8e-14 81.6 104 46.2
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 3.8e-14 81.6 105 47.6
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.4e-13 79.7 95 44.2
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.9e-13 79.3 101 44.6
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 2.5e-13 79.0 95 45.3
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 4.2e-13 78.2 103 43.7
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.2e-13 78.2 102 42.2
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.6e-12 76.3 105 40.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.0e-11 73.6 104 39.4
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.4e-11 73.2 104 43.3
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 2.3e-11 72.4 104 41.3
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.9e-11 71.6 104 39.4
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 8.8e-11 70.5 94 42.6
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.5e-10 69.7 105 37.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.0e-10 69.3 97 42.3
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.5e-10 68.9 106 39.6
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.5e-10 68.9 105 36.2
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 7.4e-10 67.4 105 37.1
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 9.7e-10 67.0 98 37.8
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 4.8e-09 64.7 96 39.6
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 6.3e-09 64.3 104 37.5
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-08 63.5 99 38.4
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-08 63.5 99 38.4
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 1.8e-08 62.8 93 41.9
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.4e-08 62.4 98 35.7
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 9.1e-08 60.5 90 40.0
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 9.1e-08 60.5 103 39.8
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 9.1e-08 60.5 105 35.2
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.5e-07 59.7 106 38.7
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 2.0e-07 59.3 103 37.9
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 2.6e-07 58.9 97 37.1
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 3.4e-07 58.5 103 37.9
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 5.9e-07 57.8 107 40.2
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 7.7e-07 57.4 110 37.3
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 7.7e-07 57.4 103 35.0
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.0e-06 57.0 102 34.3
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.2e-06 55.8 96 38.5
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.9e-06 55.5 97 36.1
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 3.8e-06 55.1 98 35.7
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 5.0e-06 54.7 101 39.6
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 6.5e-06 54.3 100 36.0
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 6.5e-06 54.3 104 36.5
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 8.5e-06 53.9 102 34.3
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 8.5e-06 53.9 97 35.1
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 8.5e-06 53.9 93 38.7
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 8.5e-06 53.9 97 34.0
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 8.5e-06 53.9 97 34.0


User provided reference genes

Program Settings