Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.9e-95 352.4 175 100.0
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 9.1e-61 237.3 133 85.0
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.4e-56 223.4 133 80.5
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 9.8e-55 217.2 133 76.7
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.8e-53 213.0 133 77.4
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.0e-52 209.5 126 77.8
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 2.0e-47 193.0 133 67.7
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.4e-47 191.8 133 66.9
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 5.7e-47 191.4 133 67.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 3.7e-46 188.7 133 65.4
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.1e-45 187.2 133 67.7
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.8e-45 186.4 133 67.7
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 3.1e-45 185.7 132 65.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.1e-45 185.7 132 65.2
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.1e-45 185.7 133 62.4
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 4.1e-45 185.3 133 67.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 5.4e-45 184.9 133 65.4
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 7.0e-45 184.5 133 66.9
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 9.1e-45 184.1 133 64.7
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 9.1e-45 184.1 133 65.4
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 2.0e-44 183.0 133 64.7
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.0e-44 183.0 134 65.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 2.7e-44 182.6 133 66.2
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.7e-44 182.6 133 63.9
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 5.9e-44 181.4 134 63.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 7.7e-44 181.0 133 63.9
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.3e-43 180.3 130 66.2
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.7e-43 179.9 133 61.7
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.3e-43 179.5 132 63.6
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 2.3e-43 179.5 131 62.6
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.9e-43 179.1 130 65.4
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.9e-43 179.1 131 62.6
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.8e-43 178.7 131 64.9
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.8e-43 178.7 131 64.9
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 3.8e-43 178.7 132 62.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.8e-43 178.7 133 62.4
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 5.0e-43 178.3 131 61.1
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 5.0e-43 178.3 133 65.4
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 5.0e-43 178.3 133 63.2
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 6.6e-43 177.9 134 61.2
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 6.6e-43 177.9 133 63.2
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.1e-42 177.2 133 64.7
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.5e-42 176.8 133 63.9
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.9e-42 176.4 130 64.6
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.9e-42 176.4 133 62.4
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.5e-42 176.0 134 61.2
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.3e-42 175.6 132 62.9
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.3e-42 175.6 133 63.2
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 4.2e-42 175.3 134 61.2
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 5.6e-42 174.9 134 60.4
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 7.2e-42 174.5 134 62.7
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 9.5e-42 174.1 133 63.2
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.2e-41 173.7 133 63.2
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.2e-41 173.7 133 60.2
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.6e-41 173.3 131 60.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 2.1e-41 172.9 135 63.0
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 2.1e-41 172.9 128 66.4
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 4.7e-41 171.8 133 58.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.7e-41 171.8 130 63.8
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.7e-41 171.8 131 61.1
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.7e-41 171.8 133 60.2
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 6.1e-41 171.4 133 60.9
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 8.0e-41 171.0 133 61.7
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 8.0e-41 171.0 130 60.8
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.0e-40 170.6 133 63.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.3e-40 169.5 133 59.4
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.3e-40 169.5 133 60.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.3e-40 169.5 133 60.2
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 5.2e-40 168.3 131 61.1
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 5.2e-40 168.3 129 62.8
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 5.2e-40 168.3 129 60.5
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 6.8e-40 167.9 135 61.5
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 8.9e-40 167.5 132 59.1
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.2e-39 167.2 130 59.2
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.5e-39 166.8 129 61.2
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.6e-39 166.0 128 64.8
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.7e-39 164.9 132 59.8
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 7.5e-39 164.5 133 61.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.5e-39 164.5 133 58.6
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 7.5e-39 164.5 133 59.4
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 9.8e-39 164.1 132 59.8
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 9.8e-39 164.1 132 57.6
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 9.8e-39 164.1 143 58.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.3e-38 163.7 133 57.1
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.7e-38 163.3 130 60.0
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 2.2e-38 162.9 133 58.6
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 2.2e-38 162.9 133 62.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.7e-38 162.2 145 57.9
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 3.7e-38 162.2 133 60.2
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 3.7e-38 162.2 130 61.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.9e-38 161.8 133 61.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 6.4e-38 161.4 133 62.4
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.4e-38 161.4 133 57.9
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.4e-37 160.2 133 59.4
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.4e-37 160.2 133 57.9
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.1e-37 158.7 131 58.8
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 4.1e-37 158.7 133 58.6
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 7.0e-37 157.9 132 60.6
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-36 157.1 131 61.8
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 3.5e-36 155.6 128 57.8
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.6e-36 155.2 133 56.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 5.9e-36 154.8 132 58.3
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.3e-35 153.7 118 61.0
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.0e-35 151.8 119 59.7
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 5.0e-35 151.8 129 59.7
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.3e-34 148.7 152 53.3
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 9.5e-34 147.5 125 55.2
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.5e-34 147.5 131 60.3
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.6e-33 146.7 124 58.9
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 4.7e-33 145.2 104 63.5
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.5e-31 140.2 133 56.4
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.0e-31 139.8 120 60.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 3.4e-31 139.0 130 50.0
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 5.8e-31 138.3 130 50.0
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 9.8e-31 137.5 106 59.4
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.7e-30 136.7 108 59.3
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.2e-30 136.3 116 58.6
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.9e-30 136.0 106 61.3
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 3.7e-30 135.6 117 57.3
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 9.2e-29 131.0 133 54.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 7.8e-28 127.9 132 50.0
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.1e-26 124.0 81 70.4
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.2e-25 120.6 130 49.2
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.1e-24 117.5 129 50.4
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.3e-24 116.3 127 51.2
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.5e-23 113.6 79 68.4
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.6e-23 112.8 126 46.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 2.6e-23 112.8 79 67.1
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.7e-22 110.2 133 45.1
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.4e-21 107.1 90 55.6
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.3e-19 99.8 133 43.6
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.5e-18 97.1 80 65.0
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 9.9e-15 84.3 60 70.0
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.6e-12 77.0 58 56.9
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.1e-12 76.6 57 64.9
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 6.6e-11 71.6 132 35.6
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.2e-09 67.4 53 56.6
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.4e-08 63.9 56 53.6
MELO3C035027.2 Cucumis melo HOM05D005658 ORTHO05D006989 4.9e-06 55.5 32 75.0
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 8.4e-06 54.7 143 28.7


User provided reference genes

Program Settings