Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1980.7 1009 100.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1739.5 1007 88.4
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1704.5 1009 87.3
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1667.1 971 88.7
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1592.4 1109 77.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1472.2 1006 75.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1466.4 1013 74.2
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1010 74.9
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1453.0 1034 73.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1446.8 1009 73.9
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1446.0 1015 73.9
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1014 73.3
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1006 72.6
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1419.8 1012 72.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1008 71.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1005 72.8
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1416.0 1009 72.6
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1412.9 1020 72.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1410.2 1011 72.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1404.0 1014 70.8
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1402.1 1007 72.1
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1400.6 1011 72.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1399.8 1015 71.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1399.8 1009 72.0
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1396.7 966 74.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1010 71.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1394.0 1007 71.1
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 1039 69.2
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 1039 69.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1389.8 1025 70.1
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1389.0 1011 70.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1023 71.0
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1032 69.6
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1014 70.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 1007 71.0
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1382.9 1016 71.2
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1382.9 1050 68.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1380.5 1011 70.9
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1375.9 1014 71.0
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1372.1 1019 69.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1371.3 1039 68.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1369.4 1033 68.9
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1364.4 1018 69.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1360.1 1017 69.2
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1359.4 1014 69.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 1017 69.1
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1357.4 1019 68.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1356.7 1015 69.3
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1356.3 1017 69.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 1010 69.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1347.8 1012 69.7
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1347.8 1007 70.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1344.3 1015 68.5
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1343.9 970 72.2
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1342.4 1009 69.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 1016 67.9
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1338.9 1008 68.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1009 68.9
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 1059 67.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1333.9 1009 68.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1333.5 1086 65.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1324.7 1018 67.8
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1324.7 1015 68.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1324.3 1019 67.2
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1322.0 1014 67.9
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 1016 68.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1320.8 1014 67.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1320.4 1015 67.1
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1018 67.6
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1015 67.4
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1319.3 1014 67.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1027 66.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 1013 68.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1317.0 1021 67.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1315.8 1013 67.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1315.1 1010 67.6
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1310.8 1046 66.3
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1302.7 989 69.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1300.4 930 73.3
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1297.0 1010 67.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1287.3 1025 64.6
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1281.9 1017 66.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1004 67.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1007 65.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1017 65.3
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1020 65.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1262.7 1004 66.4
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1251.5 1021 64.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1246.5 1016 64.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1242.3 1017 64.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1240.7 1013 64.1
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 984 66.1
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 984 65.4
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1218.0 1043 62.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 1012 63.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1213.0 1024 63.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1213.0 1030 62.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1212.2 1022 63.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1210.3 964 65.7
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1192.6 1014 62.4
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1191.4 1035 61.8
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1189.1 1143 57.0
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1178.7 1178 55.6
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 956 64.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1171.8 1012 61.8
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1165.2 1036 60.7
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1162.9 1009 62.3
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1156.0 1015 59.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1154.8 1006 59.9
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1141.7 1005 61.6
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1132.5 1016 60.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1132.5 1013 58.8
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1132.1 865 69.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1129.8 919 64.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1124.4 1018 60.6
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1093.2 897 64.7
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1089.7 991 60.8
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 2.7e-306 1055.4 945 58.5
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 3.5e-306 1055.0 816 68.6
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.7e-295 1018.1 861 63.0
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 6.9e-286 987.6 950 57.8
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.8e-268 928.7 874 58.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.9e-262 907.9 777 63.6
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.0e-261 906.4 1031 50.2
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.0e-248 863.2 1034 47.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.6e-242 843.6 984 47.5
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.7e-239 833.6 625 69.6
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.0e-233 814.3 1026 46.9
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 8.8e-233 811.2 629 67.9
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.6e-226 789.3 1027 45.5
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 8.3e-223 778.1 644 65.8
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.3e-212 743.4 900 45.3
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 5.0e-212 742.3 1218 40.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.4e-209 734.2 621 62.5
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.0e-176 624.0 390 79.2
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 9.0e-169 598.6 364 83.2
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 5.5e-158 562.8 389 74.6
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-146 524.2 429 65.7
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-145 521.2 479 61.8
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.1e-141 507.7 585 48.7
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 8.5e-127 459.1 532 50.4
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 5.9e-104 383.3 236 83.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-100 371.3 303 63.7
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 6.8e-100 369.8 258 75.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.5e-94 352.1 205 80.0
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 6.2e-85 320.1 242 69.0
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.1e-80 305.1 815 30.1
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-78 298.5 293 60.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 4.1e-73 280.8 162 81.5
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.2e-68 263.8 150 81.3
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.4e-57 229.2 226 54.4
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.9e-50 204.1 292 47.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.9e-49 202.2 257 52.1
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 4.6e-48 197.6 147 78.2
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.3e-45 189.5 114 73.7
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.8e-44 185.7 476 31.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 7.6e-43 180.3 151 60.9
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 4.8e-37 161.0 189 50.8
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.4e-36 159.5 89 75.3
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 6.7e-31 140.6 142 57.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.3e-29 136.3 135 58.5
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.3e-29 136.3 88 70.5
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 4.5e-27 127.9 77 75.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.3e-26 126.3 124 57.3
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 9.7e-22 110.2 79 70.9
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.1e-20 104.8 95 54.7
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.7e-16 92.0 80 57.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.7e-16 91.3 77 58.4
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.7e-16 91.3 77 58.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.8e-15 89.4 64 71.9
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 4.8e-13 81.3 64 59.4
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 2.2e-10 72.4 46 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.9e-10 72.0 46 71.7
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 4.2e-09 68.2 65 52.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 3.6e-08 65.1 77 49.4


User provided reference genes

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