Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 2.1e-225 785.4 401 100.0
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 3.8e-203 711.4 401 89.5
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.7e-201 705.3 402 88.3
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.6e-190 669.5 410 83.9
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 7.9e-185 650.6 401 81.0
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 2.5e-183 645.6 401 80.8
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 3.3e-183 645.2 402 81.1
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 4.3e-183 644.8 402 80.3
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 9.7e-183 643.7 401 79.6
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.6e-182 642.9 401 79.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.6e-182 642.9 401 80.8
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.2e-182 642.5 401 80.3
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.8e-182 641.3 398 79.9
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 8.2e-182 640.6 401 80.5
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.4e-181 639.8 401 80.0
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 3.1e-181 638.6 401 80.3
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 6.9e-181 637.5 401 79.8
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.2e-180 636.7 401 80.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.2e-180 636.7 401 81.0
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.5e-180 636.3 400 81.0
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 2.6e-180 635.6 401 81.0
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 3.4e-180 635.2 402 79.6
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 5.9e-180 634.4 401 79.3
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.3e-179 633.3 402 78.6
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.2e-179 632.5 402 79.4
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 2.2e-179 632.5 401 78.8
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.9e-179 632.1 401 77.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 3.8e-179 631.7 401 79.3
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.8e-179 631.7 401 79.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 8.5e-179 630.6 393 81.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 8.5e-179 630.6 398 78.6
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.9e-178 629.4 401 78.6
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.5e-178 629.0 397 78.1
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 3.2e-178 628.6 401 78.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 4.2e-178 628.2 401 79.3
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 7.2e-178 627.5 401 78.1
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 9.4e-178 627.1 406 78.1
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.6e-177 626.3 401 79.3
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.6e-177 626.3 402 78.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 2.7e-177 625.5 402 78.6
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 2.7e-177 625.5 395 78.0
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 2.7e-177 625.5 401 77.1
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.6e-177 625.2 401 78.6
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.4e-176 623.2 399 78.2
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.4e-176 623.2 399 78.2
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.0e-176 622.1 405 76.5
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.9e-176 621.7 401 78.8
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.9e-176 621.7 425 74.6
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.1e-176 621.3 389 79.7
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 2.0e-175 619.4 403 75.2
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.3e-175 618.6 404 74.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 3.3e-175 618.6 419 74.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.3e-175 618.6 402 78.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 4.3e-175 618.2 401 76.8
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 5.7e-175 617.8 403 74.9
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 9.7e-175 617.1 402 76.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 9.7e-175 617.1 401 75.6
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 9.7e-175 617.1 401 75.8
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.3e-174 616.7 401 76.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 2.2e-174 615.9 403 74.9
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.8e-174 615.5 394 78.7
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.7e-174 615.1 401 75.3
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.7e-174 615.1 403 75.9
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 4.8e-174 614.8 401 77.3
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 6.3e-174 614.4 401 75.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 8.2e-174 614.0 401 76.8
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 2.4e-173 612.5 402 75.4
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.4e-173 612.5 401 74.6
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 4.1e-173 611.7 402 75.4
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 6.9e-173 610.9 401 75.3
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 9.1e-173 610.5 401 74.8
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 9.1e-173 610.5 401 74.8
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 9.1e-173 610.5 403 74.2
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 9.1e-173 610.5 433 72.7
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.5e-172 609.8 401 75.3
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.0e-172 609.4 407 75.2
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 4.5e-172 608.2 401 74.8
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 4.5e-172 608.2 399 75.2
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 7.7e-172 607.4 395 76.2
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-171 606.7 400 74.5
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-171 606.7 400 74.8
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.3e-171 606.7 397 76.8
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.7e-171 606.3 399 74.9
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 2.2e-171 605.9 402 75.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.9e-171 605.5 402 76.6
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 3.8e-171 605.1 395 77.0
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 5.0e-171 604.7 398 74.4
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.4e-170 603.2 401 75.6
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.9e-170 602.8 399 76.9
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 4.2e-170 601.7 402 75.9
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 7.2e-170 600.9 399 74.9
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 7.2e-170 600.9 402 74.1
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 7.2e-170 600.9 402 75.6
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 2.7e-169 599.0 396 74.2
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 3.6e-169 598.6 402 75.4
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 7.9e-169 597.4 401 74.6
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.8e-168 596.3 391 75.4
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 6.3e-166 587.8 395 75.2
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.1e-165 585.5 405 74.1
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 5.9e-164 581.3 395 74.2
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.2e-163 579.3 363 78.5
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 2.2e-163 579.3 394 74.4
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-162 577.0 401 72.1
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.5e-162 576.6 493 62.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 9.4e-162 573.9 445 67.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 8.0e-161 570.9 364 78.6
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.0e-160 568.9 418 70.6
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.6e-159 565.8 445 66.5
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.5e-159 564.3 554 57.4
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.7e-158 563.1 453 67.8
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 7.0e-157 557.8 403 69.2
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.1e-153 546.2 354 78.2
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.4e-141 506.9 328 78.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.7e-139 500.0 309 78.0
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.1e-133 480.7 316 77.2
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.5e-132 475.7 292 78.8
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 3.6e-129 465.7 315 75.6
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.7e-118 430.3 343 65.6
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 2.2e-118 429.9 392 58.7
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 2.4e-117 426.4 360 60.3
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 5.4e-117 425.2 259 81.9
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.3e-114 414.8 360 57.2
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.9e-109 400.2 340 56.8
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 3.0e-99 366.3 357 52.4
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.4e-95 352.8 236 78.0
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.6e-81 307.4 284 53.2
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 5.3e-80 302.4 226 69.0
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 3.7e-73 279.6 334 44.6
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 2.2e-65 253.8 359 39.8
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.4e-59 234.6 229 56.3
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 5.1e-59 232.6 205 63.9
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.1e-58 231.5 350 40.0
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 9.7e-58 228.4 172 70.9
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.4e-53 214.5 266 48.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.6e-44 184.5 97 90.7
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.3e-33 148.3 80 86.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.7e-33 147.9 82 85.4
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.5e-29 134.8 131 57.3
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.9e-29 134.4 81 79.0
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.9e-21 107.8 105 50.5
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.3e-17 95.1 65 66.2
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 2.0e-15 87.8 93 54.8
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.1e-11 73.9 64 59.4
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.4e-08 64.3 46 71.7
Mapoly0040s0084 Marchantia polymorpha HOM05D005785 ORTHO05D007017 1.2e-07 62.0 167 28.1
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 1.0e-06 58.9 264 26.1
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.3e-06 58.5 48 62.5
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 5.0e-06 56.6 266 26.7
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 8.6e-06 55.8 276 23.6
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 8.6e-06 55.8 276 23.6


User provided reference genes

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