Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.0e-102 376.7 189 100.0
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.3e-84 316.6 191 85.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.8e-84 315.5 189 84.7
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.1e-83 311.6 189 82.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.4e-83 311.2 190 83.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.4e-77 292.0 186 77.4
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-76 290.0 188 76.6
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 4.9e-76 288.1 174 79.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.8e-75 286.2 186 76.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.4e-75 285.8 189 75.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.6e-74 283.1 187 74.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.5e-74 281.6 186 74.2
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-73 280.4 187 74.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.7e-73 279.6 187 73.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 3.8e-73 278.5 186 75.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.8e-73 278.5 186 74.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 5.0e-73 278.1 186 75.3
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.6e-73 277.7 185 71.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-72 276.9 185 73.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.3e-72 275.4 187 73.3
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.6e-72 274.6 196 69.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.3e-72 274.2 187 72.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 9.5e-72 273.9 196 69.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.2e-71 273.5 176 75.0
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.6e-71 273.1 187 73.3
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.1e-71 272.7 188 68.6
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.1e-71 272.7 186 73.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.8e-71 272.3 190 71.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 6.1e-71 271.2 173 76.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.0e-70 270.4 188 71.3
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.0e-70 270.4 187 70.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.8e-70 269.6 186 69.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.3e-70 269.2 174 73.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 8.9e-70 267.3 187 70.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.2e-69 266.9 187 70.6
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-69 266.2 187 70.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.0e-69 266.2 185 71.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.0e-69 266.2 173 75.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.6e-69 265.8 172 74.4
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.4e-69 265.0 187 69.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.4e-69 265.0 172 73.3
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.8e-69 264.6 187 69.0
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 5.8e-69 264.6 188 68.6
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 5.8e-69 264.6 172 75.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.8e-69 264.6 186 67.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 9.8e-69 263.8 187 69.0
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 9.8e-69 263.8 173 74.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.2e-68 262.7 186 69.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.2e-68 262.7 186 68.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.2e-68 262.7 183 68.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.7e-68 261.9 184 70.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.9e-68 261.5 175 72.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 6.4e-68 261.2 187 67.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 8.3e-68 260.8 179 70.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 8.3e-68 260.8 179 71.5
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-67 260.4 175 73.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-67 260.0 189 70.4
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.4e-67 260.0 187 66.3
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-67 260.0 173 72.8
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.4e-67 259.2 173 71.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 7.0e-67 257.7 188 66.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 9.2e-67 257.3 173 69.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.2e-67 257.3 173 72.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 9.2e-67 257.3 193 68.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.2e-66 256.9 163 74.8
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.0e-66 256.1 179 71.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-66 256.1 173 70.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.5e-66 255.4 173 71.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.6e-66 255.0 173 71.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.6e-66 255.0 173 71.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.0e-66 254.6 183 66.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.8e-66 254.2 185 65.9
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.0e-65 253.8 197 68.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-65 253.8 181 67.4
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-65 253.4 158 77.8
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.3e-65 253.4 185 65.9
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.3e-65 253.4 185 65.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-65 253.1 185 65.9
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.3e-65 252.7 174 71.8
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.9e-64 249.6 168 72.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.5e-64 249.2 160 72.5
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.3e-64 248.8 158 74.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.3e-64 248.8 158 74.7
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.3e-64 248.8 179 68.7
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 4.3e-64 248.4 163 72.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.6e-64 248.1 169 69.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.6e-64 248.1 166 72.9
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.5e-64 247.3 162 72.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 9.5e-64 247.3 168 74.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.2e-63 246.9 180 65.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-63 246.5 162 71.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.1e-63 246.1 174 69.0
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.1e-63 246.1 171 69.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.8e-63 245.7 163 71.2
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.7e-63 245.0 163 72.4
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-62 243.0 160 71.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.8e-62 243.0 173 67.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.1e-62 242.3 173 66.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 4.0e-62 241.9 156 75.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.0e-61 239.6 173 65.3
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.6e-61 239.2 189 64.0
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.4e-61 238.4 189 64.0
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.8e-61 238.0 184 57.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 7.5e-61 237.7 160 70.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 9.8e-61 237.3 159 68.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.7e-60 236.5 163 67.5
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-60 235.7 158 68.4
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.9e-60 235.7 157 68.8
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.4e-60 234.6 163 68.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.4e-60 234.6 171 68.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.4e-60 234.6 173 62.4
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.4e-59 233.4 173 67.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-59 233.0 168 68.5
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.2e-59 232.3 170 67.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.1e-59 231.9 160 70.0
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.1e-59 231.9 156 70.5
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.4e-59 231.5 160 68.8
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 5.4e-59 231.5 170 67.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.0e-59 231.1 176 65.9
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.0e-59 231.1 170 67.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-58 229.9 160 69.4
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.3e-57 226.9 173 66.5
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.3e-57 226.1 171 63.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.1e-56 223.8 171 62.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.5e-56 223.4 168 66.1
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 4.3e-56 221.9 173 62.4
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 7.3e-56 221.1 161 67.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.3e-56 221.1 161 67.7
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.2e-55 220.3 168 63.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.1e-55 219.5 160 62.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-55 219.2 161 67.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-55 219.2 161 67.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.8e-54 214.5 175 62.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.2e-53 213.8 177 60.5
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.6e-53 212.6 134 72.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.4e-53 212.2 157 64.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.3e-52 210.3 134 71.6
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.9e-52 208.4 173 60.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.9e-51 206.5 185 56.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 7.1e-51 204.5 160 63.8
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 9.2e-51 204.1 166 63.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 4.6e-50 201.8 163 60.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.3e-49 200.3 159 56.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.3e-49 199.5 160 56.9
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.1e-49 198.4 142 65.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.6e-47 193.4 175 58.9
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.7e-47 191.8 186 53.2
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.8e-46 189.9 163 54.6
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.8e-46 189.9 162 54.9
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.2e-46 188.3 135 71.9
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.4e-45 185.7 157 58.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.9e-45 184.1 129 72.1
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.2e-44 183.0 155 60.6
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 8.4e-44 181.0 131 71.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.3e-41 172.9 132 66.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.9e-41 172.2 185 51.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.9e-40 169.9 164 56.7
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.3e-40 169.1 121 66.1
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.8e-39 166.0 169 52.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.8e-38 163.3 142 51.4
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.3e-38 161.8 169 52.1
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-38 161.0 169 51.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.9e-33 145.6 116 65.5
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.1e-33 145.2 97 71.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.1e-30 137.5 90 72.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 5.8e-29 131.7 178 46.1
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.9e-29 131.0 155 42.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.7e-28 130.2 100 60.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.2e-28 129.8 93 66.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.4e-27 126.3 89 65.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 6.0e-26 121.7 73 75.3
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-16 90.5 79 54.4
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.6e-16 87.8 67 70.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.9e-11 73.6 107 43.9
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.3e-09 67.4 176 29.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.9e-09 65.9 52 57.7
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.1e-09 65.5 36 75.0
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 4.3e-08 62.4 58 51.7
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 9.7e-08 61.2 36 69.4
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.3e-07 60.8 80 43.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.6e-07 60.5 172 29.1
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.1e-06 57.8 32 81.2
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-06 57.4 61 39.3
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 3.1e-06 56.2 32 78.1


User provided reference genes

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