Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 3.0e-176 621.7 302 100.0
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.6e-148 528.9 288 89.9
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.6e-148 528.9 288 88.5
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 9.9e-148 526.9 298 86.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.9e-147 525.4 298 87.2
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-133 480.3 286 80.4
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 7.9e-129 464.2 289 77.9
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 3.0e-128 462.2 289 75.8
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 9.7e-127 457.2 292 74.3
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.3e-126 456.8 286 76.6
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.2e-126 456.1 289 75.8
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.8e-126 455.7 289 75.8
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.7e-126 455.3 286 78.3
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 4.8e-126 454.9 289 74.7
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 6.3e-126 454.5 289 76.8
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 8.2e-126 454.1 289 74.4
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 4.1e-125 451.8 285 76.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 6.9e-125 451.1 289 75.8
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.0e-124 449.5 295 72.5
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.0e-124 449.5 295 72.5
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.4e-124 448.7 292 72.9
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.4e-124 448.7 286 74.8
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.5e-124 448.4 289 74.4
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 4.5e-124 448.4 290 75.2
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.3e-123 446.8 289 74.7
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.7e-123 446.4 290 75.2
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.2e-123 446.0 289 75.8
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.2e-123 446.0 286 74.5
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 3.8e-123 445.3 291 74.2
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 5.0e-123 444.9 289 73.7
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.5e-123 444.5 283 75.3
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 8.5e-123 444.1 286 74.5
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.0e-120 435.6 290 74.1
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.9e-120 435.3 287 74.9
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.1e-120 434.9 290 74.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.1e-120 434.9 290 74.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.0e-119 433.0 287 74.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 2.0e-119 433.0 292 73.6
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.7e-119 431.4 286 74.8
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.7e-119 431.4 286 75.9
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 9.7e-119 430.6 289 73.0
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.2e-118 429.5 288 71.9
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.7e-118 428.7 290 73.4
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 3.7e-118 428.7 286 75.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.4e-117 426.8 253 80.2
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.8e-117 426.4 253 80.6
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.8e-117 426.4 284 71.5
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.4e-117 426.0 289 71.3
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 3.1e-117 425.6 292 71.6
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.1e-117 425.6 290 71.0
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 5.3e-117 424.9 288 70.8
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 6.9e-117 424.5 288 71.5
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.0e-116 422.9 294 72.1
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.0e-116 422.9 286 70.6
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.4e-116 422.2 288 71.2
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.4e-116 422.2 287 71.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 4.5e-116 421.8 288 71.9
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 4.5e-116 421.8 288 69.8
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.9e-116 421.4 288 70.8
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 7.7e-116 421.0 324 67.0
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.2e-115 419.5 291 71.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.9e-115 419.1 289 70.9
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.8e-115 418.7 293 69.6
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 5.0e-115 418.3 324 67.3
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.9e-114 416.4 284 72.2
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 1.9e-114 416.4 286 72.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 2.5e-114 416.0 288 68.8
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 5.5e-114 414.8 287 70.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 9.4e-114 414.1 285 69.5
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.2e-113 413.7 286 70.6
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.6e-113 413.3 286 70.3
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.6e-113 413.3 288 68.8
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.1e-113 412.9 286 68.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 3.6e-113 412.1 288 70.1
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 3.6e-113 412.1 288 68.1
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 4.7e-113 411.8 286 70.3
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 4.7e-113 411.8 284 71.1
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 6.1e-113 411.4 286 69.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.0e-112 410.6 286 70.6
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-112 410.2 286 70.6
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.4e-112 410.2 286 70.6
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.0e-112 409.1 286 70.3
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.0e-112 409.1 288 67.4
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 5.1e-112 408.3 286 69.9
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.5e-111 406.8 287 69.0
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 3.3e-111 405.6 284 69.4
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 7.4e-111 404.4 289 69.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.2e-110 402.9 286 68.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 6.3e-110 401.4 293 68.6
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 8.2e-110 401.0 302 67.2
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.1e-109 400.6 286 69.2
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.1e-109 399.1 290 69.0
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.2e-108 397.1 289 68.9
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.5e-108 395.2 292 68.8
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 5.9e-108 394.8 284 66.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 7.7e-108 394.4 285 68.8
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.7e-107 393.3 287 67.6
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.2e-107 392.9 290 69.3
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.9e-106 389.8 326 62.9
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.9e-106 389.8 326 62.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 2.1e-105 386.3 242 78.1
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 8.8e-104 380.9 255 73.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.1e-103 380.6 254 70.9
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.1e-103 380.6 262 71.0
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.1e-103 380.6 283 66.4
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.4e-101 373.6 289 65.1
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.5e-100 369.0 255 71.8
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.9e-100 368.2 227 78.0
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 3.0e-96 355.9 278 64.7
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.5e-95 353.6 260 65.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.7e-94 350.1 285 63.2
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.2e-92 344.0 241 71.0
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.5e-90 336.3 207 78.3
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 3.2e-90 335.9 294 61.2
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 4.4e-87 325.5 285 59.3
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 3.7e-86 322.4 292 58.2
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.3e-83 313.9 285 53.3
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.1e-81 305.1 284 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 8.9e-80 301.2 245 61.2
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.3e-70 270.8 229 64.6
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 7.3e-66 255.0 185 69.7
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.1e-65 253.4 172 72.7
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 4.7e-57 225.7 299 46.5
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 2.7e-52 209.9 263 43.7
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.0e-51 208.0 130 76.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.3e-41 174.5 292 35.3
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 1.1e-40 171.4 151 58.9
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-39 166.8 151 59.6
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-38 163.7 152 56.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 3.8e-38 162.9 151 57.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-34 151.0 138 58.0
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.8e-32 144.1 113 58.4
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.6e-31 138.7 264 31.4
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.3e-27 127.1 362 28.5
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.5e-26 123.6 93 65.6
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.1e-25 118.6 82 69.5
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.0e-24 116.3 99 57.6
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 5.8e-23 112.5 173 41.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.3e-22 111.3 74 70.3
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-19 101.7 60 81.7
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.0e-19 101.7 76 69.7
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 5.7e-18 95.9 64 67.2
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.4e-16 90.5 62 64.5
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.1e-16 89.7 69 63.8
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.1e-16 89.7 56 76.8
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.2e-15 88.2 65 66.2
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.2e-15 88.2 62 64.5
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.2e-15 88.2 62 64.5
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-15 87.8 92 48.9
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 5.9e-15 85.9 109 46.8
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 7.6e-15 85.5 88 51.1
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 7.6e-15 85.5 88 51.1
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.3e-14 84.7 142 37.3
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.7e-14 84.3 92 48.9
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.9e-13 80.9 189 29.1
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-13 80.9 62 59.7
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 9.3e-13 78.6 214 32.2
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-11 75.1 45 82.2
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.9e-11 73.2 122 41.8
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 4.1e-08 63.2 42 76.2
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 7.7e-07 58.9 40 72.5
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 6.5e-06 55.8 42 66.7


User provided reference genes

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