Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 4.5e-85 317.8 148 100.0
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 6.1e-74 280.8 148 88.5
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.0e-72 275.8 145 85.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 2.6e-72 275.4 148 86.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.1e-64 250.0 143 80.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.7e-63 246.1 151 76.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 4.8e-63 244.6 145 77.2
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.4e-62 242.3 146 76.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.0e-60 236.9 146 76.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.7e-60 236.1 136 75.7
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.9e-60 235.3 141 75.2
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.1e-59 233.4 140 75.7
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.5e-59 233.0 136 75.7
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.6e-58 229.6 141 73.0
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.6e-58 228.4 142 72.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.0e-58 227.3 141 72.3
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.0e-57 226.9 144 70.8
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.0e-57 226.9 144 70.1
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.0e-57 226.9 144 71.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.8e-57 226.1 142 74.6
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.3e-57 225.7 144 68.8
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 5.2e-57 224.6 149 69.1
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.2e-57 224.6 141 72.3
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 5.2e-57 224.6 140 71.4
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.5e-56 223.0 146 67.8
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 2.0e-56 222.6 142 70.4
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 3.3e-56 221.9 142 70.4
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.3e-56 221.9 143 72.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.3e-56 221.9 142 69.7
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 4.4e-56 221.5 142 68.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 5.7e-56 221.1 148 70.9
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 5.7e-56 221.1 139 72.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 5.7e-56 221.1 142 69.7
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 5.7e-56 221.1 142 69.7
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 9.7e-56 220.3 141 69.5
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.3e-55 219.9 138 71.7
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 2.8e-55 218.8 139 69.1
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 3.7e-55 218.4 145 69.7
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.1e-54 216.9 145 66.2
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.8e-54 216.1 142 67.6
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.4e-54 215.7 139 67.6
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 4.1e-54 214.9 148 66.2
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 5.3e-54 214.5 144 68.8
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 5.3e-54 214.5 143 67.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 5.3e-54 214.5 151 66.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.3e-54 214.5 140 69.3
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 9.1e-54 213.8 136 69.1
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.6e-53 213.0 144 68.8
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.0e-53 212.6 145 65.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.0e-53 212.6 143 67.1
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.0e-53 212.6 140 67.9
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 142 68.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.7e-53 212.2 142 68.3
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.7e-53 212.2 143 68.5
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 3.5e-53 211.8 135 68.1
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.5e-53 211.8 142 68.3
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 5.9e-53 211.1 217 53.0
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.9e-53 211.1 143 67.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 7.7e-53 210.7 134 69.4
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.3e-52 209.9 148 66.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-52 209.9 139 67.6
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.7e-52 209.5 145 66.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.7e-52 209.5 152 63.8
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 8.5e-52 207.2 138 68.1
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.5e-51 206.5 145 64.8
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.9e-51 206.1 161 61.5
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.9e-51 206.1 131 71.0
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 4.2e-51 204.9 144 63.2
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 9.4e-51 203.8 131 71.0
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.6e-50 203.0 138 68.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 6.1e-50 201.1 148 64.9
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 6.1e-50 201.1 148 64.9
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 8.0e-50 200.7 148 64.9
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.8e-49 199.5 133 69.2
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.8e-49 199.5 143 65.7
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 2.3e-49 199.1 132 68.2
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 4.0e-49 198.4 144 63.9
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 4.0e-49 198.4 133 66.9
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-48 196.8 148 63.5
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-48 196.8 148 63.5
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-48 196.8 148 63.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.2e-48 196.8 132 65.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.2e-48 196.8 145 62.8
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.0e-48 196.1 144 63.9
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.0e-48 196.1 144 63.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.0e-48 196.1 144 63.9
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.0e-48 196.1 144 63.9
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 9.8e-48 193.7 136 62.5
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 9.8e-48 193.7 136 62.5
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 9.8e-48 193.7 132 65.9
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.3e-47 193.4 137 66.4
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.7e-47 193.0 148 64.2
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.2e-47 192.6 129 68.2
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 6.3e-47 191.0 145 60.0
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.3e-47 190.7 129 67.4
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 8.3e-47 190.7 137 61.3
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.8e-46 189.5 127 66.1
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-46 189.5 129 67.4
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.4e-46 189.1 129 66.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 7.0e-46 187.6 122 71.3
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-45 186.8 121 71.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.2e-45 186.8 148 58.8
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.6e-45 186.4 138 60.1
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.7e-45 185.7 144 62.5
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.3e-44 183.3 132 62.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 6.5e-44 181.0 144 57.6
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 4.7e-42 174.9 112 72.3
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.3e-41 172.6 121 64.5
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 4.0e-41 171.8 140 50.0
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.2e-40 170.2 149 49.0
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 4.1e-38 161.8 127 55.1
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.2e-37 160.2 125 59.2
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.6e-37 159.8 148 49.3
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 2.9e-36 155.6 86 83.7
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 4.3e-35 151.8 124 54.8
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.6e-32 142.5 217 36.4
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 3.4e-32 142.1 135 51.1
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 6.4e-31 137.9 136 46.3
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 8.3e-31 137.5 149 51.0
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.1e-30 137.1 94 69.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.4e-30 136.7 134 45.5
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.4e-30 136.0 86 73.3
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 7.0e-30 134.4 130 49.2
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 4.6e-29 131.7 81 75.3
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.3e-28 130.2 134 44.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-27 125.9 121 49.6
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 7.3e-27 124.4 117 48.7
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-26 123.6 121 48.8
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.4e-25 120.2 96 61.5
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.3e-23 113.6 146 37.0
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 8.3e-23 110.9 162 38.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-22 110.2 95 51.6
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 9.2e-22 107.5 136 36.8
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-21 106.3 95 50.5
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.7e-21 105.9 136 37.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.1e-20 101.7 134 37.3
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 4.3e-19 98.6 89 56.2
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 8.3e-15 84.3 59 62.7
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 9.2e-14 80.9 135 28.1
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.2e-14 80.9 53 67.9
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.2e-14 80.9 53 67.9
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 3.5e-13 79.0 135 26.7
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.7e-12 76.6 107 34.6
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 3.9e-12 75.5 62 53.2


User provided reference genes

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