Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 0.0e+00 1075.1 552 100.0
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 5.6e-197 691.4 495 75.6
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.4e-187 660.2 513 71.2
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 3.0e-166 589.3 482 68.3
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 4.6e-143 512.3 399 70.4
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 7.2e-96 355.5 533 44.5
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 4.7e-87 326.2 534 42.7
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 5.4e-83 312.8 528 43.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 1.7e-81 307.8 567 40.9
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.2e-79 301.6 528 41.5
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 7.5e-77 292.4 520 39.0
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 9.8e-77 292.0 542 39.9
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.7e-76 291.2 535 40.7
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 2.9e-76 290.4 519 42.0
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 4.9e-76 289.7 532 40.0
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.9e-75 287.7 529 41.2
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.2e-75 287.0 560 39.3
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.2e-74 285.0 560 39.1
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 3.3e-72 276.9 527 38.5
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 7.3e-72 275.8 519 41.2
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.8e-71 273.9 528 39.0
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 4.0e-70 270.0 539 39.9
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 5.8e-69 266.2 535 38.5
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 7.5e-69 265.8 456 42.3
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.2e-68 264.2 536 39.0
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 1.0e-65 255.4 539 38.4
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 5.1e-65 253.1 526 37.1
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 5.6e-64 249.6 531 37.5
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 5.6e-64 249.6 534 36.3
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 7.3e-64 249.2 526 36.7
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 3.6e-63 246.9 534 39.0
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.8e-62 244.6 534 37.5
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 9.9e-61 238.8 466 38.2
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 9.9e-61 238.8 533 37.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 2.9e-60 237.3 536 37.3
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 3.2e-59 233.8 575 37.4
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 4.1e-59 233.4 538 36.4
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 4.1e-59 233.4 523 36.9
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 9.2e-59 232.3 402 39.3
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.3e-57 227.6 501 37.7
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 3.0e-57 227.3 575 36.0
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 3.9e-57 226.9 527 36.1
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 3.9e-57 226.9 570 35.1
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 3.9e-57 226.9 486 35.6
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 5.1e-57 226.5 531 37.3
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 6.6e-57 226.1 536 35.3
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.5e-56 224.2 543 36.1
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 4.3e-56 223.4 610 35.1
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.1e-55 221.1 496 37.3
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 2.8e-55 220.7 563 35.7
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 3.6e-55 220.3 361 41.8
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.8e-54 218.0 567 34.6
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.0e-54 216.9 487 35.1
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 4.0e-54 216.9 529 35.2
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 8.9e-54 215.7 483 36.9
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.0e-53 214.5 424 39.2
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 2.6e-53 214.2 409 36.2
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 3.4e-53 213.8 530 35.3
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 7.6e-53 212.6 521 35.7
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 1.3e-52 211.8 530 36.0
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 2.9e-52 210.7 522 35.1
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 6.4e-52 209.5 427 39.3
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 8.4e-52 209.1 580 33.8
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.4e-51 207.6 522 34.7
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 2.4e-51 207.6 531 34.5
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 3.2e-51 207.2 524 34.5
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 1.6e-50 204.9 525 35.0
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 7.8e-50 202.6 543 35.4
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 2.3e-49 201.1 528 35.6
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 5.1e-49 199.9 487 35.1
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.5e-48 197.6 504 33.3
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 3.3e-48 197.2 523 33.8
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 4.3e-48 196.8 523 33.3
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 5.6e-48 196.4 532 35.7
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.3e-47 195.3 389 38.0
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.1e-47 194.5 534 34.1
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.1e-46 192.2 592 32.8
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.1e-46 192.2 479 34.9
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 5.3e-46 189.9 533 34.0
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 6.9e-46 189.5 511 33.1
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 6.9e-46 189.5 380 38.2
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 9.0e-46 189.1 412 35.2
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.4e-45 187.2 543 34.8
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 4.5e-45 186.8 449 33.0
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 9.9e-45 185.7 366 38.8
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 2.4e-43 181.0 532 32.5
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 3.5e-42 177.2 357 37.0
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 6.0e-42 176.4 602 31.9
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.8e-41 174.9 613 30.7
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 6.7e-41 172.9 552 31.5
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.1e-40 172.2 542 34.3
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 4.3e-40 170.2 372 34.9
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.6e-39 168.3 527 31.9
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.0e-37 161.4 288 41.3
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 5.8e-37 159.8 468 33.5
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.3e-36 158.7 524 30.5
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 2.4e-35 154.5 564 31.0
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 4.2e-35 153.7 615 31.2
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.6e-34 150.2 577 29.8
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 3.3e-32 144.1 347 37.5
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 4.3e-32 143.7 627 28.5
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 5.6e-32 143.3 627 28.7
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 5.6e-32 143.3 627 28.7
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.1e-30 139.0 630 28.6
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.8e-30 138.3 524 28.6
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.1e-26 124.8 527 29.0
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 3.0e-25 120.9 280 33.9
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 9.7e-24 115.9 213 38.5
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 9.7e-24 115.9 494 29.6
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 5.9e-21 106.7 425 28.5
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.1e-19 102.4 229 34.1
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.6e-18 98.6 440 25.2
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 8.2e-15 86.3 556 26.1
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.5e-13 82.0 247 32.0
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.7e-12 78.6 97 44.3
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 2.5e-11 74.7 60 60.0


User provided reference genes

Program Settings