Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.7e-88 328.2 165 100.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 6.5e-77 290.8 162 89.5
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.5e-76 289.7 162 89.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.2e-76 288.1 162 90.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.5e-54 215.3 156 68.6
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 6.6e-53 211.1 155 71.0
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 8.1e-51 204.1 160 67.5
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.2e-50 201.4 165 63.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.6e-49 199.1 154 66.2
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.6e-49 199.1 154 66.2
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.5e-49 197.6 154 65.6
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.9e-48 194.9 171 60.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.1e-47 193.7 171 59.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-47 193.7 154 64.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-47 193.7 154 64.9
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.4e-47 193.4 165 61.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 9.2e-47 190.7 171 60.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.7e-46 189.1 162 63.0
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 6.0e-46 188.0 156 62.8
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.0e-45 187.2 156 62.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.9e-45 185.3 165 59.4
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 8.6e-45 184.1 165 60.0
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.5e-44 183.3 165 59.4
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.5e-44 182.6 165 58.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.3e-44 182.2 156 61.5
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 3.3e-44 182.2 166 60.2
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.3e-44 182.2 165 60.0
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.8e-42 176.4 158 57.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.3e-42 176.0 170 55.3
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.3e-42 176.0 170 55.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 3.1e-42 175.6 164 55.5
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.0e-42 175.3 170 54.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 5.2e-42 174.9 165 57.0
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 8.9e-42 174.1 165 55.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 8.9e-42 174.1 165 55.8
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 8.9e-42 174.1 164 56.7
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.2e-41 173.7 165 56.4
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 4.4e-41 171.8 168 56.5
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 4.4e-41 171.8 165 54.5
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 9.9e-41 170.6 154 56.5
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.3e-40 170.2 164 53.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.8e-40 168.7 152 59.2
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.8e-40 168.7 165 54.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.1e-39 167.2 165 57.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.9e-39 166.4 166 55.4
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.4e-39 164.9 164 52.4
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 5.4e-39 164.9 154 57.1
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.7e-37 159.8 125 65.6
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.0e-37 159.1 218 43.6
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 6.6e-37 157.9 155 54.8
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 7.3e-36 154.5 179 48.6
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 7.3e-36 154.5 176 48.9
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.2e-35 153.7 176 48.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.2e-35 153.7 173 49.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.7e-35 151.8 265 37.7
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.1e-34 150.6 154 52.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.4e-34 150.2 155 53.5
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.8e-34 149.8 144 57.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.4e-34 149.4 156 54.5
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.4e-34 149.4 156 54.5
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 2.4e-34 149.4 166 52.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 8.9e-34 147.5 176 48.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 8.9e-34 147.5 154 52.6
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.2e-33 147.1 180 46.7
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.5e-33 146.7 166 50.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.8e-33 144.8 155 52.3
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 7.6e-33 144.4 155 49.7
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 9.9e-33 144.1 166 50.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.9e-33 144.1 168 51.8
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.7e-32 143.3 165 49.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.7e-32 143.3 171 49.1
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.2e-32 142.9 168 51.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 8.4e-32 141.0 177 49.7
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.4e-31 140.2 159 50.3
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.4e-31 139.4 165 49.7
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 3.2e-31 139.0 166 51.2
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 9.3e-31 137.5 164 47.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.7e-30 136.0 171 45.0
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 3.5e-30 135.6 159 50.3
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 6.0e-30 134.8 163 49.7
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 6.0e-30 134.8 163 49.7
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 6.0e-30 134.8 169 46.7
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.0e-29 134.0 167 48.5
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.3e-29 133.7 163 49.7
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.3e-29 133.7 169 49.1
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.7e-29 133.3 172 50.0
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.3e-29 132.9 163 49.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.0e-29 132.5 171 44.4
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.9e-29 132.1 167 49.7
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 5.1e-29 131.7 201 40.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.5e-28 130.2 163 49.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 5.6e-28 128.3 175 45.1
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 7.3e-28 127.9 165 44.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.3e-27 127.1 166 48.8
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-27 127.1 135 52.6
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.3e-27 127.1 190 41.6
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.6e-27 126.7 184 44.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.6e-27 126.7 167 47.3
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-27 126.3 173 48.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-26 124.0 166 47.0
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.4e-26 122.9 193 40.9
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.4e-26 122.9 167 46.1
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.2e-25 120.6 167 45.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.4e-25 119.0 168 43.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 9.9e-25 117.5 165 46.1
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.2e-24 116.3 166 41.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 8.4e-24 114.4 165 41.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 9.3e-23 110.9 201 37.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.1e-20 104.0 131 45.8
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.3e-20 102.4 234 33.8
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 5.6e-20 101.7 161 41.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 7.4e-20 101.3 178 40.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.1e-19 99.8 195 37.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.8e-19 99.4 155 41.9
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.6e-19 99.0 104 51.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.8e-19 98.6 172 38.4
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-18 96.7 155 39.4
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.5e-17 92.0 155 38.1
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.9e-16 89.4 173 39.3
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.9e-16 88.6 131 41.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.1e-15 87.4 163 40.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.9e-15 86.7 161 34.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 3.2e-15 85.9 156 34.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 4.2e-15 85.5 130 43.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 4.2e-15 85.5 172 34.3
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 7.1e-15 84.7 155 40.0
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.7e-14 82.8 165 33.9
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.0e-13 80.9 165 33.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.8e-13 80.1 172 33.1
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.3e-13 79.7 165 37.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 8.7e-13 77.8 165 36.4
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.9e-12 76.6 168 35.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 9.6e-12 74.3 156 32.1
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 4.8e-11 72.0 130 37.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.0e-09 66.6 168 29.8
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 4.9e-08 62.0 52 59.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-07 60.5 61 50.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.9e-07 60.1 92 40.2
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 4.2e-07 58.9 69 46.4
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 5.5e-07 58.5 45 57.8
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.2e-06 57.4 50 54.0


User provided reference genes

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