Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 3.3e-81 305.1 163 100.0
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 2.0e-33 146.4 133 65.4
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 5.5e-28 128.3 152 57.9
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 3.5e-22 109.0 127 48.8
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 8.6e-21 104.4 126 46.8
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 3.6e-19 99.0 116 46.6
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 8.9e-18 94.4 120 46.7
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 8.9e-18 94.4 115 48.7
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 8.9e-18 94.4 115 48.7
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.5e-17 93.6 122 41.8
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.4e-17 92.4 148 38.5
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 3.4e-17 92.4 125 44.8
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 9.8e-17 90.9 121 43.0
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 9.8e-17 90.9 115 46.1
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 2.2e-16 89.7 124 45.2
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.2e-16 89.7 131 38.2
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 6.4e-16 88.2 122 41.8
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.1e-15 87.4 142 34.5
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 2.4e-15 86.3 139 36.0
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 4.1e-15 85.5 122 39.3
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 4.1e-15 85.5 116 38.8
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 4.1e-15 85.5 116 38.8
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 4.1e-15 85.5 141 38.3
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 4.1e-15 85.5 137 38.7
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 4.1e-15 85.5 137 38.7
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 4.1e-15 85.5 121 41.3
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 5.4e-15 85.1 129 45.0
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 7.0e-15 84.7 116 38.8
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 9.2e-15 84.3 123 44.7
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 1.2e-14 84.0 130 45.4
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.6e-14 83.6 116 42.2
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 1.6e-14 83.6 122 41.0
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 2.0e-14 83.2 117 43.6
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 6.0e-14 81.6 117 42.7
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 7.8e-14 81.3 119 40.3
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.0e-13 80.9 129 38.0
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 3.0e-13 79.3 130 39.2
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 6.6e-13 78.2 138 36.2
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 1.1e-12 77.4 143 34.3
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 2.5e-12 76.3 123 42.3
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 2.1e-11 73.2 112 37.5
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.6e-11 72.4 129 33.3
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 3.6e-11 72.4 146 34.9
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 8.0e-11 71.2 136 35.3
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 8.0e-11 71.2 120 35.8
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 1.4e-10 70.5 124 37.9
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 4.0e-10 68.9 137 35.8
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 5.2e-10 68.6 121 34.7
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 6.8e-10 68.2 127 36.2
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 6.8e-10 68.2 134 38.1
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 8.9e-10 67.8 122 36.1
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 4.4e-09 65.5 158 27.8
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 9.8e-09 64.3 119 37.0
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 9.8e-09 64.3 152 32.9
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.2e-08 63.2 119 37.0
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 3.7e-08 62.4 135 32.6
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 8.3e-08 61.2 130 33.1
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.4e-07 60.5 119 37.0
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.9e-07 60.1 116 31.9
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 2.4e-07 59.7 150 28.7
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 2.4e-07 59.7 150 28.7
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 2.4e-07 59.7 150 28.7
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 3.2e-07 59.3 133 33.1
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 7.1e-07 58.2 122 36.1
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 9.2e-07 57.8 120 32.5
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.6e-06 57.0 129 31.0
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 2.1e-06 56.6 119 34.5
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 2.1e-06 56.6 119 34.5
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 2.1e-06 56.6 119 34.5
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 2.1e-06 56.6 131 32.1
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 2.1e-06 56.6 119 34.5
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 2.7e-06 56.2 119 36.1
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-06 56.2 121 32.2
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 3.5e-06 55.8 121 29.8
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 3.5e-06 55.8 121 29.8
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 4.6e-06 55.5 119 32.8
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 4.6e-06 55.5 119 32.8
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 4.6e-06 55.5 121 32.2
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.6e-06 55.5 121 30.6


User provided reference genes

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