Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018722 Sechium edule HOM05D001864 ORTHO05D003978 5.5e-53 210.7 105 100.0
MELO3C008808.2 Cucumis melo HOM05D001864 ORTHO05D003978 3.1e-32 141.7 89 79.8
CsaV3_4G013230 Cucumis sativus L. HOM05D001864 ORTHO05D003978 3.8e-30 134.8 89 76.4
Sed0023969 Sechium edule HOM05D001864 ORTHO05D003978 6.5e-30 134.0 89 74.2
ClCG04G005360 Citrullus lanatus HOM05D001864 ORTHO05D003978 1.9e-21 105.9 157 43.9
Haze_19431 Corylus avellana HOM05D001864 ORTHO05D003978 4.8e-17 91.3 84 56.0
MD14G1003500 Malus domestica HOM05D001864 ORTHO05D003978 7.0e-16 87.4 93 50.5
CiPaw.10G001400 Carya illinoinensis HOM05D001864 ORTHO05D003978 2.2e-14 82.4 85 51.8
Potri.013G057100 Populus trichocarpa HOM05D001864 ORTHO05D003978 3.8e-14 81.6 100 50.0
Manes.08G145100 Manihot esculenta HOM05D001864 ORTHO05D003978 6.5e-14 80.9 81 53.1
MD12G1005000 Malus domestica HOM05D001864 ORTHO05D003978 2.5e-13 79.0 92 45.7
MBI04_g37010_MAGBIO Magnolia biondii HOM05D001864 ORTHO05D003978 2.7e-12 75.5 106 43.4
MSTRG.18020 Avicennia marina HOM05D001864 ORTHO05D003978 3.6e-12 75.1 72 50.0
Lj2A359T51 Lonicera japonica HOM05D001864 ORTHO05D003978 6.1e-12 74.3 105 43.8
Manes.09G140400 Manihot esculenta HOM05D001864 ORTHO05D003978 1.0e-11 73.6 81 48.1
RcHm_v2.0_Chr3g0496981 Rosa chinensis HOM05D001864 ORTHO05D003978 2.3e-11 72.4 92 44.6
Sabra19G0044300 Salix brachista HOM05D001864 ORTHO05D003978 2.3e-11 72.4 79 48.1
Sabra19G0047600 Salix brachista HOM05D001864 ORTHO05D003978 2.3e-11 72.4 79 48.1
MSTRG.18881 Avicennia marina HOM05D001864 ORTHO05D003978 3.0e-11 72.0 81 44.4
Migut.D02586 Erythranthe guttata HOM05D001864 ORTHO05D003978 3.0e-11 72.0 82 43.9
Potri.019G035700 Populus trichocarpa HOM05D001864 ORTHO05D003978 3.0e-11 72.0 99 43.4
Prupe.7G006000 Prunus persica HOM05D001864 ORTHO05D003978 3.0e-11 72.0 98 42.9
Glyma.02G072600 Glycine max HOM05D001864 ORTHO05D003978 4.0e-11 71.6 89 44.9
DCAR_013682 Daucus carota HOM05D001864 ORTHO05D003978 5.2e-11 71.2 80 48.8
Migut.D02562 Erythranthe guttata HOM05D001864 ORTHO05D003978 5.2e-11 71.2 82 43.9
Lsat_1_v5_gn_2_52361 Lactuca sativa HOM05D001864 ORTHO05D003978 5.2e-11 71.2 85 41.2
SalBow3G1280 Salvia bowleyana HOM05D001864 ORTHO05D003978 6.8e-11 70.9 83 44.6
RcHm_v2.0_Chr6g0254961 Rosa chinensis HOM05D001864 ORTHO05D003978 8.8e-11 70.5 95 43.2
TAR633G2381 Trochodendron aralioides HOM05D001864 ORTHO05D003978 8.8e-11 70.5 86 47.7
Duzib106G0097 Durio zibethinus HOM05D001864 ORTHO05D003978 1.2e-10 70.1 84 47.6
Dinv37022 Davidia involucrata HOM05D001864 ORTHO05D003978 1.5e-10 69.7 105 41.9
Oeu023947.1 Olea europaea HOM05D001864 ORTHO05D003978 2.6e-10 68.9 70 47.1
Migut.N00557 Erythranthe guttata HOM05D001864 ORTHO05D003978 3.4e-10 68.6 100 39.0
Lalb_Chr06g0174001 Lupinus albus HOM05D001864 ORTHO05D003978 3.4e-10 68.6 73 47.9
Phvul.001G111600 Phaseolus vulgaris HOM05D001864 ORTHO05D003978 3.4e-10 68.6 78 47.4
Phvul.004G080800 Phaseolus vulgaris HOM05D001864 ORTHO05D003978 3.4e-10 68.6 50 60.0
Atru.chr2.1395 Acer truncatum HOM05D001864 ORTHO05D003978 5.7e-10 67.8 75 45.3
Ciclev10021429m.g Citrus clementina HOM05D001864 ORTHO05D003978 5.7e-10 67.8 85 43.5
Duzib106G0999 Durio zibethinus HOM05D001864 ORTHO05D003978 5.7e-10 67.8 84 46.4
FAN19G2640 Fragaria x ananassa HOM05D001864 ORTHO05D003978 5.7e-10 67.8 80 43.8
GSVIVG01033411001 Vitis vinifera HOM05D001864 ORTHO05D003978 7.5e-10 67.4 104 42.3
AL3G13750 Arabidopsis lyrata HOM05D001864 ORTHO05D003978 9.8e-10 67.0 100 39.0
FAN26G1675 Fragaria x ananassa HOM05D001864 ORTHO05D003978 9.8e-10 67.0 80 43.8
Lj2g0020687 Lotus japonicus HOM05D001864 ORTHO05D003978 1.7e-09 66.2 85 45.9
TWI60G0056 Tripterygium wilfordii HOM05D001864 ORTHO05D003978 1.7e-09 66.2 83 42.2
Oeu023702.1 Olea europaea HOM05D001864 ORTHO05D003978 2.2e-09 65.9 85 38.8
MSTRG.12794 Avicennia marina HOM05D001864 ORTHO05D003978 2.8e-09 65.5 81 45.7
CSS0018558 Camellia sinensis var. sinensis HOM05D001864 ORTHO05D003978 2.8e-09 65.5 92 37.0
CSS0029027 Camellia sinensis var. sinensis HOM05D001864 ORTHO05D003978 2.8e-09 65.5 92 37.0
FAN28G1321 Fragaria x ananassa HOM05D001864 ORTHO05D003978 2.8e-09 65.5 102 39.2
SalBow2G3010 Salvia bowleyana HOM05D001864 ORTHO05D003978 2.8e-09 65.5 81 40.7
TWI32G0490 Tripterygium wilfordii HOM05D001864 ORTHO05D003978 2.8e-09 65.5 85 42.4
Dinv33725 Davidia involucrata HOM05D001864 ORTHO05D003978 3.7e-09 65.1 86 39.5
FvH4_1g28240 Fragaria vesca HOM05D001864 ORTHO05D003978 4.9e-09 64.7 102 39.2
Lj1g0016755 Lotus japonicus HOM05D001864 ORTHO05D003978 4.9e-09 64.7 72 43.1
Ca_04484_v3 Cicer arietinum L. HOM05D001864 ORTHO05D003978 6.3e-09 64.3 97 40.2
Aa31LG5G14440 Aethionema arabicum HOM05D001864 ORTHO05D003978 8.3e-09 63.9 81 43.2
AT3G03860 Arabidopsis thaliana HOM05D001864 ORTHO05D003978 8.3e-09 63.9 81 40.7
FAN28G1841 Fragaria x ananassa HOM05D001864 ORTHO05D003978 8.3e-09 63.9 102 39.2
Nn2g12053 Nelumbo nucifera HOM05D001864 ORTHO05D003978 8.3e-09 63.9 100 38.0
unitig_749.g13502 Utricularia gibba HOM05D001864 ORTHO05D003978 8.3e-09 63.9 63 44.4
Aqoxy1G00471 Aquilegia oxysepala HOM05D001864 ORTHO05D003978 1.1e-08 63.5 78 41.0
Duzib128G0883 Durio zibethinus HOM05D001864 ORTHO05D003978 1.1e-08 63.5 80 46.2
Eucgr.A02105 Eucalyptus grandis HOM05D001864 ORTHO05D003978 1.1e-08 63.5 81 46.9
Thhalv10014257m.g Eutrema salsugineum HOM05D001864 ORTHO05D003978 1.1e-08 63.5 103 38.8
Thecc.05G249700 Theobroma cacao HOM05D001864 ORTHO05D003978 1.1e-08 63.5 104 42.3
Carub.0003s0305 Capsella rubella HOM05D001864 ORTHO05D003978 1.4e-08 63.2 89 40.4
Thhalv10021238m.g Eutrema salsugineum HOM05D001864 ORTHO05D003978 1.4e-08 63.2 82 41.5
Gohir.A08G218600 Gossypium hirsutum HOM05D001864 ORTHO05D003978 1.4e-08 63.2 88 45.5
THA.LOC104802871 Tarenaya hassleriana HOM05D001864 ORTHO05D003978 1.4e-08 63.2 85 43.5
Gorai.007G345900 Gossypium raimondii HOM05D001864 ORTHO05D003978 1.8e-08 62.8 81 44.4
Solyc01g005600.4 Solanum lycopersicum HOM05D001864 ORTHO05D003978 1.8e-08 62.8 83 42.2
Sopen01g001620 Solanum pennellii HOM05D001864 ORTHO05D003978 1.8e-08 62.8 83 42.2
PGSC0003DMG400032168 Solanum tuberosum HOM05D001864 ORTHO05D003978 1.8e-08 62.8 82 41.5
CDE02G1154 Ceratophyllum demersum HOM05D001864 ORTHO05D003978 2.4e-08 62.4 77 46.8
Gohir.D08G235800 Gossypium hirsutum HOM05D001864 ORTHO05D003978 2.4e-08 62.4 69 47.8
Gorai.004G250500 Gossypium raimondii HOM05D001864 ORTHO05D003978 2.4e-08 62.4 69 47.8
THA.LOC104820777 Tarenaya hassleriana HOM05D001864 ORTHO05D003978 2.4e-08 62.4 81 43.2
Dinv06520 Davidia involucrata HOM05D001864 ORTHO05D003978 3.1e-08 62.0 75 42.7
Glyma.19G112900 Glycine max HOM05D001864 ORTHO05D003978 3.1e-08 62.0 89 42.7
PGR142G0475 Punica granatum HOM05D001864 ORTHO05D003978 4.1e-08 61.6 81 44.4
arahy.Tifrunner.gnm1.ann1.V53FRA Arachis hypogaea HOM05D001864 ORTHO05D003978 5.4e-08 61.2 91 37.4
arahy.Tifrunner.gnm1.ann1.YJ9VNC Arachis hypogaea HOM05D001864 ORTHO05D003978 5.4e-08 61.2 97 38.1
CDE05G2320 Ceratophyllum demersum HOM05D001864 ORTHO05D003978 5.4e-08 61.2 77 45.5
COL.COLO4_36086 Corchorus olitorius HOM05D001864 ORTHO05D003978 5.4e-08 61.2 83 45.8
Nitab4.5_0000658g0010 Nicotiana tabacum HOM05D001864 ORTHO05D003978 5.4e-08 61.2 69 47.8
Sp3g02830 Schrenkiella parvula HOM05D001864 ORTHO05D003978 5.4e-08 61.2 98 37.8
AL6G29320 Arabidopsis lyrata HOM05D001864 ORTHO05D003978 7.0e-08 60.8 76 43.4
FAN23G0909 Fragaria x ananassa HOM05D001864 ORTHO05D003978 7.0e-08 60.8 102 38.2
Gohir.D11G246100 Gossypium hirsutum HOM05D001864 ORTHO05D003978 7.0e-08 60.8 84 41.7
Gorai.007G261900 Gossypium raimondii HOM05D001864 ORTHO05D003978 7.0e-08 60.8 84 41.7
Psat0s2688g0040 Pisum sativum HOM05D001864 ORTHO05D003978 7.0e-08 60.8 97 41.2
BcaC05g29902 Brassica carinata HOM05D001864 ORTHO05D003978 9.2e-08 60.5 82 40.2
BolC5t34974H Brassica oleracea HOM05D001864 ORTHO05D003978 9.2e-08 60.5 82 40.2
Lalb_Chr21g0317191 Lupinus albus HOM05D001864 ORTHO05D003978 9.2e-08 60.5 92 39.1
Nitab4.5_0000394g0120 Nicotiana tabacum HOM05D001864 ORTHO05D003978 1.2e-07 60.1 69 44.9
Aa31LG11G11480 Aethionema arabicum HOM05D001864 ORTHO05D003978 1.6e-07 59.7 103 40.8
Gohir.D11G314700 Gossypium hirsutum HOM05D001864 ORTHO05D003978 1.6e-07 59.7 81 42.0
Lalb_Chr22g0359071 Lupinus albus HOM05D001864 ORTHO05D003978 1.6e-07 59.7 86 41.9
A01p41290 Brassica napus HOM05D001864 ORTHO05D003978 2.0e-07 59.3 100 38.0
A05p43530 Brassica napus HOM05D001864 ORTHO05D003978 2.0e-07 59.3 82 40.2
BNapus_Darmor_BZH_scaffold_78p00420 Brassica napus HOM05D001864 ORTHO05D003978 2.0e-07 59.3 100 38.0
Glyma.16G040200 Glycine max HOM05D001864 ORTHO05D003978 2.0e-07 59.3 56 50.0
HanXRQChr15g0495761 Helianthus annuus HOM05D001864 ORTHO05D003978 2.0e-07 59.3 81 35.8
Hma1.2p1_0449F.1_g155110 Hydrangea macrophylla HOM05D001864 ORTHO05D003978 2.0e-07 59.3 84 39.3
Medtr6g029240 Medicago truncatula HOM05D001864 ORTHO05D003978 2.0e-07 59.3 91 39.6
BraA05t23093Z Brassica rapa HOM05D001864 ORTHO05D003978 2.7e-07 58.9 101 37.6
CANSAT78G0958 Cannabis sativa HOM05D001864 ORTHO05D003978 2.7e-07 58.9 45 60.0
Sp6g26190 Schrenkiella parvula HOM05D001864 ORTHO05D003978 2.7e-07 58.9 89 40.4
BraA01t04552Z Brassica rapa HOM05D001864 ORTHO05D003978 4.5e-07 58.2 100 38.0
Cc06_g23080 Coffea canephora HOM05D001864 ORTHO05D003978 4.5e-07 58.2 68 44.1
Gohir.A11G235200 Gossypium hirsutum HOM05D001864 ORTHO05D003978 4.5e-07 58.2 105 39.0
Gohir.A11G299800 Gossypium hirsutum HOM05D001864 ORTHO05D003978 4.5e-07 58.2 81 42.0
A03p33460 Brassica napus HOM05D001864 ORTHO05D003978 7.7e-07 57.4 83 42.2
BcaC05g30287 Brassica carinata HOM05D001864 ORTHO05D003978 1.3e-06 56.6 87 37.9
ECA238G2651 Erigeron canadensis HOM05D001864 ORTHO05D003978 1.3e-06 56.6 67 44.8
PGR042G1374 Punica granatum HOM05D001864 ORTHO05D003978 1.3e-06 56.6 98 36.7
BcaNung05739 Brassica carinata HOM05D001864 ORTHO05D003978 2.3e-06 55.8 105 39.0
BolC1t05802H Brassica oleracea HOM05D001864 ORTHO05D003978 2.3e-06 55.8 100 37.0
Lalb_Chr14g0364561 Lupinus albus HOM05D001864 ORTHO05D003978 2.3e-06 55.8 80 40.0
vmacro05724 Vaccinium macrocarpon HOM05D001864 ORTHO05D003978 2.3e-06 55.8 79 40.5
Actinidia02702 Actinidia chinensis HOM05D001864 ORTHO05D003978 2.9e-06 55.5 79 38.0
CARHR194950 Cardamine hirsuta HOM05D001864 ORTHO05D003978 2.9e-06 55.5 101 33.7
Carub.0006s1641 Capsella rubella HOM05D001864 ORTHO05D003978 3.8e-06 55.1 103 36.9
Nitab4.5_0012156g0010 Nicotiana tabacum HOM05D001864 ORTHO05D003978 3.8e-06 55.1 51 49.0
Rhsim04G0091500 Rhododendron simsii HOM05D001864 ORTHO05D003978 3.8e-06 55.1 84 45.2
THA.LOC104827274 Tarenaya hassleriana HOM05D001864 ORTHO05D003978 5.0e-06 54.7 80 41.2
Sc09g0000080 Simmondsia chinensis HOM05D001864 ORTHO05D003978 8.6e-06 53.9 103 39.8


User provided reference genes

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