Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.5e-294 1015.4 495 100.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.1e-231 806.6 509 79.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 4.5e-230 801.2 509 78.4
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.0e-226 790.0 509 78.2
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 5.3e-215 751.1 509 75.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 3.5e-198 695.3 503 69.2
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.1e-196 690.3 518 67.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.5e-196 689.1 509 68.0
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.1e-195 686.0 504 69.4
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.0e-194 682.2 504 67.1
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 4.0e-194 681.8 518 66.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 6.7e-194 681.0 510 66.3
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 8.8e-194 680.6 511 67.9
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.2e-193 680.2 504 67.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.6e-193 679.1 504 66.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.3e-193 678.7 513 66.3
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-191 672.9 505 65.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.8e-191 672.9 505 65.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.8e-191 672.9 515 66.6
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.0e-191 671.0 519 65.3
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 9.1e-191 670.6 528 64.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.0e-190 669.5 520 64.0
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 5.9e-190 667.9 506 66.0
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.7e-189 666.4 511 65.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.9e-189 665.6 509 63.7
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.1e-188 663.7 514 64.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.5e-188 663.3 518 65.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-188 662.1 504 65.1
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-188 662.1 504 65.1
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 9.4e-188 660.6 513 63.9
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 9.4e-188 660.6 513 65.1
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 9.4e-188 660.6 516 62.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.6e-187 659.8 511 65.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 8.0e-187 657.5 517 63.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.0e-187 657.5 525 63.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.0e-187 657.5 525 63.8
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 8.0e-187 657.5 531 62.5
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.8e-186 656.4 523 64.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.8e-186 656.4 509 65.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.3e-186 656.0 531 62.3
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.0e-186 655.6 525 62.3
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 3.0e-186 655.6 529 62.6
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 8.8e-186 654.1 519 62.8
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.5e-185 653.3 516 64.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.6e-185 652.5 523 63.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.7e-185 651.4 502 64.9
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 9.8e-185 650.6 510 64.5
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.7e-184 649.8 510 64.5
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 4.8e-184 648.3 543 62.1
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 6.3e-184 647.9 529 61.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.4e-183 646.7 546 60.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.4e-183 646.7 546 60.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-183 645.6 508 63.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 3.1e-183 645.6 516 62.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.1e-183 645.6 518 65.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.0e-183 644.4 518 63.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.2e-182 643.7 509 62.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.6e-182 643.3 528 61.7
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.0e-182 642.9 521 62.2
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.5e-182 642.1 507 63.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.0e-181 640.6 506 63.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.3e-181 640.2 516 63.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.7e-181 639.8 518 62.9
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.8e-181 638.6 513 61.8
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.0e-181 638.3 515 61.7
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 6.5e-181 637.9 512 61.7
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 8.6e-181 637.5 518 60.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.2e-180 635.6 508 61.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.6e-179 632.1 515 61.7
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 6.1e-179 631.3 508 62.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.1e-179 631.3 526 59.7
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 8.0e-179 630.9 450 68.0
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.8e-178 629.8 521 60.8
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 3.7e-176 622.1 457 66.1
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 4.1e-175 618.6 522 60.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 7.0e-175 617.8 523 59.8
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.6e-174 616.7 534 58.2
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.0e-173 614.0 511 60.3
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-173 613.6 466 64.6
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.7e-173 613.2 524 59.5
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.9e-173 612.5 520 60.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 8.6e-173 610.9 530 58.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-172 609.4 530 58.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 4.3e-172 608.6 478 62.6
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 5.6e-172 608.2 524 58.8
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.3e-172 607.8 525 59.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 9.5e-172 607.4 530 58.5
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 9.5e-172 607.4 511 60.5
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.5e-172 607.4 510 61.8
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-171 607.1 530 58.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.2e-171 607.1 539 58.4
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.1e-171 606.3 535 57.2
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.8e-171 605.9 517 57.6
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.7e-171 605.1 501 58.9
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 6.8e-170 601.3 539 57.3
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 5.7e-169 598.2 480 58.8
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 8.3e-168 594.3 506 59.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.2e-166 590.5 511 58.7
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 8.6e-165 584.3 453 62.7
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.5e-164 583.6 475 59.2
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.9e-164 583.2 463 62.4
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.3e-164 582.0 402 69.4
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.8e-163 579.3 512 59.2
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-162 576.6 522 57.5
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 7.5e-161 571.2 393 69.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.2e-159 565.8 452 61.7
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.7e-158 562.8 524 56.5
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-151 540.4 446 58.7
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 3.3e-148 529.3 446 59.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.6e-147 526.9 467 58.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.4e-145 519.2 492 55.5
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 5.4e-143 511.9 382 65.4
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 5.8e-137 491.9 311 74.9
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.9e-136 489.6 425 57.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.1e-134 483.4 295 76.9
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.5e-129 467.2 306 71.6
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.4e-128 461.8 310 68.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.1e-127 461.1 311 68.8
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.3e-117 427.6 457 46.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.3e-115 421.0 275 69.5
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.8e-115 419.9 499 43.9
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 8.2e-115 418.3 382 57.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 5.7e-108 395.6 408 48.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.0e-105 387.1 238 78.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 3.8e-104 382.9 246 76.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.5e-100 370.2 241 73.4
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-82 311.6 522 39.7
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.0e-80 305.1 198 74.2
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.6e-78 296.6 339 48.4
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.0e-77 295.0 308 52.3
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.8e-75 287.0 222 61.7
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-74 285.0 201 67.7
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.8e-64 250.0 166 72.9
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.9e-63 247.7 271 50.2
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 6.8e-53 212.6 237 49.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.4e-52 210.3 237 49.4
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.0e-48 197.2 218 51.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-48 196.8 436 29.8
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-47 194.1 161 61.5
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 3.4e-44 183.7 129 62.8
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 3.4e-44 183.7 129 62.8
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 5.8e-44 183.0 124 65.3
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.3e-43 181.8 183 49.7
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 8.3e-43 179.1 109 76.1
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.4e-36 157.1 173 48.6
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 3.2e-34 150.6 163 47.9
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.4e-34 149.8 177 49.2
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.6e-33 148.3 162 48.8
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.5e-33 147.1 108 60.2
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 4.7e-30 136.7 162 43.8
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.8e-29 134.8 98 67.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.7e-27 128.3 81 67.9
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.7e-27 128.3 81 67.9
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.9e-27 127.5 247 35.2
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.6e-25 120.2 95 62.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.6e-25 120.2 158 45.6
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.6e-24 116.3 259 32.4
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.5e-23 115.2 85 60.0
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 4.3e-23 113.6 104 57.7
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-18 97.8 72 66.7
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-12 76.6 70 52.9
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 9.9e-12 75.9 89 44.9
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.2e-10 70.9 207 30.9
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.5e-07 61.2 34 85.3
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 2.1e-06 58.2 61 54.1


User provided reference genes

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