Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 2.5e-50 201.8 105 100.0
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 4.1e-24 114.8 66 84.8
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 5.3e-24 114.4 66 84.8
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 3.6e-20 101.7 66 72.7
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 3.6e-20 101.7 66 72.7
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 3.6e-20 101.7 66 72.7
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 6.8e-19 97.4 90 57.8
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 6.8e-19 97.4 66 69.7
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 8.8e-19 97.1 66 66.7
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 1.2e-18 96.7 90 57.8
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 2.6e-18 95.5 66 65.2
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 9.8e-18 93.6 66 63.6
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 2.8e-17 92.0 66 66.7
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.8e-17 92.0 66 66.7
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.8e-17 92.0 90 55.6
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 2.8e-17 92.0 66 66.7
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 8.3e-17 90.5 90 50.0
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 1.1e-16 90.1 63 65.1
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 1.4e-16 89.7 90 53.3
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 2.4e-16 89.0 83 55.4
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 2.4e-16 89.0 90 50.0
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 3.1e-16 88.6 90 52.2
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 4.1e-16 88.2 67 62.7
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 5.4e-16 87.8 67 64.2
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 5.4e-16 87.8 66 60.6
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 7.0e-16 87.4 63 61.9
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 7.0e-16 87.4 61 65.6
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 9.1e-16 87.0 66 57.6
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 9.1e-16 87.0 90 50.0
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 9.1e-16 87.0 66 57.6
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 1.2e-15 86.7 66 62.1
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 1.2e-15 86.7 63 60.3
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.6e-15 86.3 63 60.3
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 2.7e-15 85.5 90 48.9
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 2.7e-15 85.5 66 54.5
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 2.7e-15 85.5 90 50.0
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 4.5e-15 84.7 90 51.1
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 4.5e-15 84.7 63 60.3
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 4.5e-15 84.7 66 56.1
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 7.7e-15 84.0 66 57.6
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 7.7e-15 84.0 91 47.3
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 7.7e-15 84.0 91 47.3
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.3e-14 83.2 69 63.8
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.7e-14 82.8 91 46.2
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 2.2e-14 82.4 66 62.1
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 2.9e-14 82.0 66 57.6
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 2.9e-14 82.0 66 63.6
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 3.8e-14 81.6 84 54.8
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 5.0e-14 81.3 66 57.6
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 5.0e-14 81.3 63 60.3
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 8.5e-14 80.5 61 65.6
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 8.5e-14 80.5 68 54.4
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.1e-13 80.1 63 54.0
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 4.2e-13 78.2 66 60.6
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 4.2e-13 78.2 66 60.6
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 4.2e-13 78.2 58 62.1
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 4.2e-13 78.2 58 62.1
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 4.2e-13 78.2 63 55.6
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 5.5e-13 77.8 66 60.6
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 5.5e-13 77.8 60 60.0
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 7.2e-13 77.4 66 60.6
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 9.5e-13 77.0 66 59.1
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 1.2e-12 76.6 84 52.4
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.6e-12 76.3 60 56.7
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 1.6e-12 76.3 66 59.1
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 2.7e-12 75.5 61 62.3
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 3.6e-12 75.1 61 54.1
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 3.6e-12 75.1 60 60.0
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 4.7e-12 74.7 69 58.0
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 4.7e-12 74.7 69 58.0
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 6.1e-12 74.3 60 58.3
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 6.1e-12 74.3 51 66.7
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 8.0e-12 73.9 63 52.4
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 1.0e-11 73.6 67 58.2
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 1.4e-11 73.2 60 55.0
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 1.4e-11 73.2 83 48.2
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 1.8e-11 72.8 61 57.4
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 2.3e-11 72.4 60 55.0
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 3.0e-11 72.0 67 50.7
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 3.0e-11 72.0 66 57.6
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 4.0e-11 71.6 69 53.6
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 5.2e-11 71.2 70 50.0
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 5.2e-11 71.2 69 52.2
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 6.8e-11 70.9 69 52.2
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 6.8e-11 70.9 69 52.2
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 6.8e-11 70.9 51 62.7
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 1.2e-10 70.1 70 51.4
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 1.5e-10 69.7 60 51.7
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 1.5e-10 69.7 60 51.7
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 1.5e-10 69.7 60 53.3
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 2.0e-10 69.3 69 52.2
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 2.0e-10 69.3 36 88.9
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 3.4e-10 68.6 60 51.7
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 4.4e-10 68.2 60 53.3
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 4.4e-10 68.2 49 61.2
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 4.4e-10 68.2 36 86.1
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 7.5e-10 67.4 60 51.7
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.3e-09 66.6 36 83.3
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.1e-08 61.6 36 77.8
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.6e-07 59.7 36 69.4
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 2.0e-07 59.3 36 72.2
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 2.0e-07 59.3 36 69.4
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 2.7e-07 58.9 36 72.2
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 7.7e-07 57.4 36 69.4
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 1.0e-06 57.0 36 66.7
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 1.7e-06 56.2 68 47.1
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 2.9e-06 55.5 36 69.4


User provided reference genes

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