Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-18 95.9 68 100.0
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 4.2e-14 80.9 68 75.0
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 7.2e-14 80.1 68 72.1
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 4.7e-13 77.4 68 75.0
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 6.1e-13 77.0 68 64.7
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 6.1e-13 77.0 68 64.7
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 6.1e-13 77.0 68 64.7
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 68 63.2
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 3.0e-12 74.7 68 63.2
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 4.0e-12 74.3 68 60.3
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 5.2e-12 73.9 68 61.8
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 2.6e-11 71.6 66 62.1
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 2.6e-11 71.6 68 75.0
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 7.5e-11 70.1 66 74.2
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 75.8
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.2e-10 68.6 68 70.6
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 67.6
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 55.9
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 75.0
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 3.7e-10 67.8 66 72.7
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 3.7e-10 67.8 67 64.2
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 3.7e-10 67.8 67 64.2
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 6.3e-10 67.0 68 52.9
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 6.3e-10 67.0 68 52.9
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.3e-10 67.0 65 66.2
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 6.3e-10 67.0 67 56.7
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.1e-09 66.2 65 58.5
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.1e-09 66.2 65 58.5
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.1e-09 66.2 68 63.2
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.1e-09 66.2 68 57.4
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.1e-09 66.2 68 69.1
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 1.4e-09 65.9 67 64.2
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 1.4e-09 65.9 67 64.2
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 1.4e-09 65.9 67 64.2
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 63.2
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 72.7
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 51.5
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 51.5
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 51.5
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.8e-09 65.5 62 58.1
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 75.8
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 52.9
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 2.4e-09 65.1 67 61.2
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 2.4e-09 65.1 64 56.2
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 60.3
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 4.1e-09 64.3 69 62.3
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 73.5
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 66.2
CiPaw.04G005500 Carya illinoinensis HOM05D002873 ORTHO05D002978 5.4e-09 63.9 68 76.5
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.4e-09 63.9 66 69.7
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 5.4e-09 63.9 68 70.6
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 5.4e-09 63.9 66 65.2
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 7.0e-09 63.5 66 65.2
CiPaw.04G005400 Carya illinoinensis HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 76.5
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 64.7
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 9.1e-09 63.2 66 54.5
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.6e-08 62.4 66 75.8
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.6e-08 62.4 66 75.8
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.6e-08 62.4 66 77.3
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 1.6e-08 62.4 66 77.3
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.6e-08 62.4 67 64.2
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 67 56.7
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 77.3
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 54.5
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 66.2
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 69.7
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 64.7
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 70.6
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 3.5e-08 61.2 66 71.2
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 67.6
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.5e-08 61.2 66 72.7
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 4.5e-08 60.8 65 50.8
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 4.5e-08 60.8 65 50.8
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 5.9e-08 60.5 68 64.7
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 5.9e-08 60.5 66 60.6
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 7.7e-08 60.1 66 53.0
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 7.7e-08 60.1 63 69.8
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 7.7e-08 60.1 66 72.7
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 61.8
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 61.8
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 7.7e-08 60.1 64 54.7
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.0e-07 59.7 65 55.4
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 1.0e-07 59.7 68 66.2
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 1.0e-07 59.7 68 73.5
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 68.2
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 70.8
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 63 57.1
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 51.5
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 66.2
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 61.8
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 59.1
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 73.5
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 76.5
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 57.4
Migut.K00873 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 75.8
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 2.9e-07 58.2 62 64.5
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 74.2
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 53.0
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 63.2
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 74.2
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 61.8
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 61.8
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 67.6
Actinidia36291 Actinidia chinensis HOM05D002873 ORTHO05D002978 5.0e-07 57.4 66 69.7
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 5.0e-07 57.4 66 50.0
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 6.6e-07 57.0 62 53.2
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 8.6e-07 56.6 66 50.0
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 8.6e-07 56.6 64 48.4
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 8.6e-07 56.6 64 48.4
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 8.6e-07 56.6 64 48.4
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 8.6e-07 56.6 64 48.4
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 8.6e-07 56.6 67 55.2
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.5e-06 55.8 68 61.8
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 1.9e-06 55.5 70 51.4
MELO3C022081.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.9e-06 55.5 37 83.8
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 68 48.5
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 39 71.8
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 64 46.9
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 64 46.9
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 2.5e-06 55.1 64 46.9
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 60 48.3
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 71.2
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 3.3e-06 54.7 68 70.6
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.3e-06 54.7 68 70.6
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 3.3e-06 54.7 68 70.6
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 4.2e-06 54.3 68 57.4
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 71.2
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 71.2
Cc07_g04790 Coffea canephora HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 72.7
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 69 71.0
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 4.2e-06 54.3 68 70.6
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 4.2e-06 54.3 63 47.6
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 48.5
MELO3C022079.2 Cucumis melo HOM05D002873 ORTHO05D002978 5.5e-06 53.9 35 80.0
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 5.5e-06 53.9 60 66.7
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 57.4
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 63.6
Peaxi162Scf00019g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 7.2e-06 53.5 37 75.7
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 60.3
Lalb_Chr04g0258241 Lupinus albus HOM05D002873 ORTHO05D015153 9.5e-06 53.1 63 73.0
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 50.0


User provided reference genes

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