Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 9.7e-95 350.1 176 100.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.2e-81 306.6 176 88.1
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.6e-81 306.2 176 88.1
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 6.1e-81 304.3 172 88.4
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.4e-72 276.6 166 83.1
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 4.0e-72 275.0 177 79.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 6.8e-72 274.2 170 81.8
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.5e-71 273.1 177 78.5
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.6e-71 272.3 177 79.7
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 9.8e-71 270.4 177 78.0
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 9.8e-71 270.4 173 76.3
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.3e-70 270.0 175 76.6
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.8e-70 268.9 177 76.8
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.8e-70 268.9 168 78.6
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 3.7e-70 268.5 177 76.8
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.8e-70 268.1 177 77.4
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 4.8e-70 268.1 176 75.6
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 8.3e-70 267.3 177 76.3
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 8.3e-70 267.3 169 78.7
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.1e-69 266.9 170 76.5
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.1e-69 266.9 178 78.1
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.8e-69 266.2 171 78.4
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.1e-69 265.0 174 78.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 5.4e-69 264.6 177 78.0
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 5.4e-69 264.6 177 77.4
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 5.4e-69 264.6 169 78.1
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 5.4e-69 264.6 173 77.5
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 7.0e-69 264.2 169 78.1
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.2e-68 263.5 177 75.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.2e-68 263.5 177 75.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 77.1
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.5e-68 261.9 176 76.1
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 5.9e-68 261.2 176 74.4
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.9e-68 261.2 177 76.3
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 7.7e-68 260.8 177 76.8
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 7.7e-68 260.8 178 74.2
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.0e-67 260.4 176 76.7
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.0e-67 260.4 169 78.1
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.7e-67 259.6 178 74.2
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.7e-67 259.6 173 75.7
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 2.9e-67 258.8 173 75.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.9e-67 258.8 167 77.2
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.8e-67 258.5 173 75.1
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 3.8e-67 258.5 177 74.6
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.8e-67 258.5 177 76.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 3.8e-67 258.5 173 76.3
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 6.5e-67 257.7 173 74.6
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.5e-67 257.7 177 75.1
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 6.5e-67 257.7 173 75.1
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 6.5e-67 257.7 178 73.6
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 8.6e-67 257.3 169 76.3
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 8.6e-67 257.3 173 75.1
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.5e-66 256.5 177 71.8
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.9e-66 256.1 168 76.2
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.5e-66 255.8 177 75.1
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 5.5e-66 254.6 166 75.9
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 5.5e-66 254.6 173 75.7
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 9.5e-66 253.8 176 75.6
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.2e-65 253.4 177 73.4
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.6e-65 253.1 167 77.2
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.6e-65 253.1 176 75.0
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.6e-65 253.1 177 74.6
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.1e-65 252.7 177 73.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 2.1e-65 252.7 168 73.8
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.1e-65 252.7 175 75.4
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.8e-65 252.3 177 73.4
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.8e-65 252.3 177 73.4
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 4.7e-65 251.5 175 72.0
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.1e-65 251.1 171 76.0
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.4e-64 250.0 166 76.5
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-64 250.0 177 74.0
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-64 250.0 177 73.4
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.4e-64 250.0 174 71.8
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.8e-64 249.6 175 72.0
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.8e-64 249.6 201 66.2
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-64 249.2 177 73.4
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 2.3e-64 249.2 177 71.8
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.3e-64 249.2 177 72.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.0e-64 248.8 167 74.3
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.0e-64 248.8 181 71.8
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 4.0e-64 248.4 175 71.4
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 4.0e-64 248.4 177 73.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 5.2e-64 248.1 167 74.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 6.8e-64 247.7 177 70.1
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-63 246.9 177 73.4
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.2e-63 246.9 173 72.8
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.5e-63 246.5 175 70.3
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 2.0e-63 246.1 165 74.5
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 2.0e-63 246.1 177 72.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.0e-63 246.1 165 75.8
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.6e-63 245.7 167 73.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.4e-63 245.4 175 70.3
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 3.4e-63 245.4 178 70.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 3.4e-63 245.4 175 69.7
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.4e-63 245.4 174 70.7
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 3.4e-63 245.4 169 74.6
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 3.4e-63 245.4 162 74.7
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.4e-63 245.0 177 71.8
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 7.5e-63 244.2 167 73.1
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 9.8e-63 243.8 175 69.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.8e-63 243.8 219 62.1
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.7e-62 243.0 169 74.0
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 2.2e-62 242.7 169 72.8
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.8e-62 242.3 175 69.7
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.9e-62 241.5 160 76.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 8.3e-62 240.7 167 72.5
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 2.4e-61 239.2 170 71.8
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.1e-61 238.8 173 70.5
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.1e-61 238.8 174 71.3
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 4.1e-61 238.4 167 72.5
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 7.0e-61 237.7 171 71.9
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.7e-60 235.7 167 70.1
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.7e-60 235.7 171 70.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.7e-60 235.7 157 77.7
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 3.5e-60 235.3 168 70.8
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 4.5e-60 235.0 171 69.0
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.5e-60 235.0 167 71.3
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 5.0e-59 231.5 167 69.5
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 1.1e-58 230.3 167 69.5
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.5e-58 229.2 172 70.3
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.0e-56 222.2 147 74.8
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 8.9e-56 220.7 147 74.1
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.5e-55 219.9 207 57.0
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.5e-55 219.9 171 66.1
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.0e-52 209.5 157 68.2
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.0e-52 209.5 175 64.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 2.1e-49 199.5 144 70.8
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.7e-44 182.6 114 79.8
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.6e-44 181.8 166 62.0
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 6.0e-44 181.4 117 80.3
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.7e-43 179.9 162 54.9
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.0e-43 179.1 168 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 3.3e-42 175.6 162 53.7
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.2e-41 173.7 114 73.7
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.1e-41 172.9 164 53.7
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 8.1e-41 171.0 114 77.2
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.6e-39 166.0 167 52.7
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.9e-38 162.5 167 50.9
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.3e-34 148.7 158 53.8
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 7.3e-34 147.9 160 50.0
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 9.5e-34 147.5 168 50.0
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.1e-33 146.4 83 83.1
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.4e-32 143.7 222 39.6
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.8e-32 143.3 187 48.1
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.2e-32 141.7 161 47.8
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 8.9e-32 141.0 84 81.0
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 5.8e-31 138.3 81 80.2
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 4.9e-30 135.2 101 70.3
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 7.1e-29 131.3 135 54.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.6e-28 130.2 96 69.8
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.5e-26 123.6 85 68.2
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 6.9e-24 114.8 113 56.6
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.0e-23 113.2 93 65.6
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.9e-22 108.6 94 61.7
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 3.5e-20 102.4 97 58.8
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 6.6e-19 98.2 75 68.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 6.6e-19 98.2 80 60.0
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.3e-17 94.0 135 45.2
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 9.3e-13 77.8 190 34.2
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 2.5e-10 69.7 50 64.0
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 6.2e-09 65.1 48 62.5
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 8.1e-09 64.7 39 71.8
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-08 64.3 84 45.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 9.0e-08 61.2 51 54.9


User provided reference genes

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