Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 5.1e-290 1000.3 505 100.0
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 4.4e-257 891.0 507 87.8
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 7.7e-254 880.2 507 86.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 5.9e-246 854.0 475 89.5
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.0e-218 761.5 503 74.2
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.9e-218 760.4 480 76.0
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 7.6e-217 757.3 490 74.9
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 7.6e-217 757.3 487 75.2
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 2.9e-216 755.4 490 74.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.9e-216 755.4 503 72.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 3.7e-216 755.0 482 73.9
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 4.9e-216 754.6 494 73.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.4e-215 753.1 490 73.7
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.4e-215 753.1 494 73.9
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.4e-215 752.3 494 73.9
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 4.1e-215 751.5 508 72.2
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 5.4e-215 751.1 494 74.3
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.2e-214 750.0 508 71.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.1e-214 749.2 488 74.0
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 4.6e-214 748.0 479 74.7
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.0e-214 747.7 488 73.6
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 7.8e-214 747.3 489 72.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.0e-213 746.9 488 73.8
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.7e-213 746.1 488 73.8
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 3.3e-212 741.9 482 73.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 3.3e-212 741.9 486 72.0
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 4.3e-212 741.5 481 73.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 9.6e-212 740.3 488 72.5
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.6e-211 739.6 490 72.2
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.1e-211 739.2 486 73.3
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.8e-211 738.8 473 74.4
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.6e-211 738.4 483 73.3
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 6.2e-211 737.6 507 70.0
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 6.2e-211 737.6 481 72.6
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 8.1e-211 737.3 493 71.2
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.4e-210 736.5 485 73.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.1e-210 735.3 487 70.8
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 5.2e-210 734.6 487 72.7
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 4.4e-209 731.5 489 70.8
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 5.8e-209 731.1 487 71.5
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 9.9e-209 730.3 477 73.2
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 9.9e-209 730.3 479 73.1
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.2e-208 729.2 505 68.9
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 6.4e-208 727.6 482 72.4
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 5.4e-207 724.5 489 70.6
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 9.3e-207 723.8 488 70.9
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.7e-206 722.2 505 68.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 7.8e-206 720.7 505 68.5
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.0e-205 718.8 505 68.1
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.0e-205 718.8 508 70.7
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.1e-205 718.0 509 68.8
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-204 716.8 505 68.1
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-204 716.5 505 67.5
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.9e-204 716.1 467 72.2
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 4.3e-204 714.9 489 70.1
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.3e-203 713.4 492 70.9
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 3.6e-203 711.8 489 70.1
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 4.8e-203 711.4 477 70.4
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 4.0e-202 708.4 483 70.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.0e-202 708.4 491 69.2
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.9e-200 702.2 478 70.5
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 9.3e-199 697.2 508 67.1
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 4.6e-198 694.9 480 68.8
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 6.0e-198 694.5 505 67.3
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 7.9e-198 694.1 486 69.8
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.0e-197 693.7 504 66.5
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 3.9e-197 691.8 489 68.3
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.5e-196 689.9 481 68.4
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.9e-196 689.5 481 68.6
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 3.3e-196 688.7 442 74.0
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 4.3e-196 688.3 486 67.3
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 7.4e-196 687.6 481 67.8
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.8e-195 685.6 459 70.8
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.8e-195 685.6 471 68.8
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.8e-194 682.9 481 67.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 2.4e-194 682.6 492 65.4
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.1e-194 682.2 481 68.0
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.0e-194 681.8 489 67.9
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 6.9e-194 681.0 485 66.2
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 6.9e-194 681.0 489 67.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 9.0e-194 680.6 471 67.1
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 9.0e-194 680.6 484 69.0
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.5e-193 679.9 481 66.5
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.5e-193 679.9 481 66.5
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.5e-193 679.9 481 66.5
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.7e-192 676.4 451 72.1
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.2e-192 676.0 509 66.0
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.4e-192 674.5 440 72.3
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.1e-191 673.7 440 72.7
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.1e-190 669.5 440 70.9
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.9e-189 665.2 466 68.9
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.3e-188 662.1 478 65.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 9.6e-188 660.6 480 63.5
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.1e-187 659.4 468 67.7
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.2e-187 657.9 477 67.3
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.6e-185 652.5 467 65.3
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 9.3e-183 644.0 440 70.9
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.3e-183 644.0 484 64.5
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.0e-181 639.0 474 64.8
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.9e-180 636.3 480 62.3
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.5e-180 636.0 406 74.6
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.3e-179 633.6 474 65.6
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.8e-178 629.8 453 66.4
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.0e-177 626.3 487 64.9
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.9e-172 609.8 390 74.4
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.2e-171 606.3 469 63.8
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.5e-169 600.1 382 74.1
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 3.2e-167 592.4 477 62.1
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.1e-166 589.7 467 61.2
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.1e-162 575.5 482 62.0
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.0e-157 559.3 440 61.8
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 8.0e-150 534.6 474 55.5
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.3e-148 529.3 484 55.8
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 3.7e-147 525.8 463 56.4
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 8.2e-147 524.6 462 56.3
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.8e-138 496.9 338 68.9
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-137 494.2 317 75.7
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 3.5e-137 492.7 346 69.9
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.6e-134 482.6 328 71.3
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 9.2e-130 468.0 479 49.9
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 3.5e-121 439.5 296 73.0
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 5.9e-121 438.7 296 72.6
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 4.3e-119 432.6 466 48.5
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 5.8e-116 422.2 285 69.1
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.9e-111 407.1 380 55.5
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 9.2e-98 361.7 250 67.2
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 7.3e-95 352.1 534 41.6
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.4e-90 337.0 605 36.0
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 7.9e-81 305.4 451 41.5
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.3e-78 298.1 466 41.2
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.6e-60 237.3 155 71.0
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 5.3e-53 213.0 213 51.6
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 4.6e-49 199.9 240 47.1
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-39 168.7 157 56.7
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.0e-39 167.9 306 36.6
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.8e-38 163.3 108 76.9
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.0e-31 141.4 117 55.6
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 3.3e-31 140.6 232 38.8
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.0e-28 131.3 99 65.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.7e-27 128.3 87 65.5
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.8e-24 118.2 76 69.7
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.7e-19 101.7 69 66.7
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 2.3e-19 101.3 68 76.5
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 6.1e-17 93.2 92 52.2
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 3.7e-06 57.4 38 71.1


User provided reference genes

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