Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018655 Sechium edule HOM05D007094 ORTHO05D008264 5.6e-62 240.7 118 100.0
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 5.6e-22 107.8 105 61.0
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 9.6e-22 107.1 90 71.1
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 8.1e-21 104.0 95 65.3
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 5.6e-14 81.3 112 45.5
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 3.7e-13 78.6 114 45.6
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 4.8e-13 78.2 115 45.2
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 4.8e-13 78.2 110 48.2
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 8.1e-13 77.4 111 48.6
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 8.1e-13 77.4 111 48.6
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 1.4e-12 76.6 115 47.8
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 4.0e-12 75.1 114 44.7
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 2.6e-11 72.4 115 44.3
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 2.6e-11 72.4 110 43.6
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 5.8e-11 71.2 112 42.9
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 5.8e-11 71.2 93 49.5
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 3.8e-10 68.6 107 41.1
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 4.9e-10 68.2 93 47.3
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 4.9e-10 68.2 93 47.3
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 4.9e-10 68.2 93 47.3
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 6.4e-10 67.8 93 47.3
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 1.4e-09 66.6 110 41.8
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 2.4e-09 65.9 116 39.7
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 3.2e-09 65.5 108 41.7
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 3.2e-09 65.5 110 43.6
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 4.2e-09 65.1 99 43.4
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 4.2e-09 65.1 76 50.0
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 7.1e-09 64.3 109 39.4
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 7.1e-09 64.3 109 39.4
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 7.1e-09 64.3 71 53.5
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.2e-08 63.5 84 46.4
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.6e-08 63.2 93 40.9
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 2.7e-08 62.4 95 45.3
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 2.7e-08 62.4 121 35.5
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 6.0e-08 61.2 65 49.2
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 6.0e-08 61.2 65 49.2
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 7.9e-08 60.8 91 47.3
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 7.9e-08 60.8 98 40.8
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 7.9e-08 60.8 94 44.7
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.0e-07 60.5 91 44.0
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 1.3e-07 60.1 81 48.1
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 1.8e-07 59.7 66 47.0
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 2.3e-07 59.3 94 41.5
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 2.3e-07 59.3 118 39.8
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 3.0e-07 58.9 100 39.0
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 3.0e-07 58.9 110 40.9
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 3.9e-07 58.5 72 50.0
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 5.1e-07 58.2 87 42.5
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 5.1e-07 58.2 59 54.2
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 5.1e-07 58.2 66 47.0
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 1.5e-06 56.6 58 55.2
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 1.9e-06 56.2 49 55.1
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 1.9e-06 56.2 70 48.6
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 1.9e-06 56.2 81 43.2
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 1.9e-06 56.2 66 43.9
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 2.5e-06 55.8 74 47.3
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 2.5e-06 55.8 108 38.0
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 2.5e-06 55.8 103 35.0
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 3.3e-06 55.5 95 42.1
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 3.3e-06 55.5 94 43.6
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 4.3e-06 55.1 95 40.0
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 4.3e-06 55.1 91 42.9
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 5.6e-06 54.7 91 42.9
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 9.6e-06 53.9 95 42.1
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 9.6e-06 53.9 59 52.5


User provided reference genes

Program Settings