Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1912.9 936 100.0
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1590.9 928 84.3
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1587.8 933 83.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1425.2 826 84.7
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1243.0 931 68.0
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1230.3 924 67.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1222.6 934 66.5
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1222.2 926 67.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1216.1 930 68.2
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1212.2 932 66.8
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1210.7 917 67.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1210.3 923 67.0
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1207.6 916 67.5
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1204.9 979 64.1
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1202.6 919 66.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1202.2 931 66.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1201.4 934 64.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1198.7 938 65.0
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1196.0 924 66.0
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 934 64.5
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1191.8 932 65.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1191.8 930 65.5
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1189.9 935 66.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 920 65.5
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1182.2 915 66.8
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1181.4 916 66.7
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1179.5 938 66.0
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1179.5 925 65.0
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1177.2 933 63.5
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1175.6 952 63.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1174.5 925 64.2
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1174.1 919 66.4
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 926 65.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1172.9 937 64.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 924 64.9
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 912 64.7
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 964 63.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1160.2 915 64.0
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1159.1 928 63.7
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 933 64.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 922 64.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1154.0 922 63.8
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 927 63.1
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 913 65.1
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 1014 60.1
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1147.1 967 61.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1146.0 897 65.0
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 938 62.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 935 64.1
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 932 61.3
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 940 63.6
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 922 63.1
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1134.0 932 64.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 933 61.1
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1124.0 875 66.7
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 949 61.3
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 991 59.6
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 988 59.8
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 991 59.4
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1116.7 1034 59.1
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 948 60.7
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1114.0 923 62.9
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 920 61.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1107.0 998 59.0
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 972 60.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1103.6 939 60.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 922 60.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 945 59.9
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1100.1 935 60.4
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 939 60.8
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 947 60.1
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 943 61.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 924 60.8
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 955 59.7
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 907 60.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1090.1 917 60.9
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1087.4 920 60.8
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1087.4 920 60.8
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1086.6 1004 59.3
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 1054 56.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 941 59.0
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 924 60.1
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 938 59.7
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 6.4e-312 1073.9 929 61.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 9.6e-311 1070.1 937 59.4
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 2.4e-309 1065.4 930 58.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 5.4e-309 1064.3 940 59.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 5.4e-309 1064.3 940 59.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 5.4e-309 1064.3 959 59.3
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.5e-306 1056.2 954 58.2
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 4.0e-304 1048.1 905 59.1
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.2e-303 1046.6 953 58.3
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.2e-302 1042.3 917 58.0
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 7.0e-301 1037.3 900 61.3
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 9.2e-301 1036.9 1037 53.5
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.7e-300 1035.4 873 60.9
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 3.5e-300 1035.0 815 65.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.0e-299 1033.5 921 57.8
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 8.6e-299 1030.4 840 64.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 8.6e-299 1030.4 935 58.3
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 2.1e-297 1025.8 906 59.8
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.3e-296 1022.3 905 59.8
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 7.5e-295 1017.3 930 58.1
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.2e-294 1015.8 944 56.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.4e-293 1013.1 929 57.6
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 7.0e-293 1010.7 912 57.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.0e-291 1005.4 1052 52.5
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.3e-286 989.9 958 56.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 8.3e-286 987.3 946 55.8
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.3e-283 979.9 1191 48.6
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.3e-278 963.4 819 60.2
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.9e-266 922.9 781 61.5
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 4.5e-255 885.2 947 52.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.4e-253 879.4 906 52.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.2e-253 878.6 691 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.5e-247 858.6 955 48.9
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 5.8e-247 858.2 970 49.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 4.8e-241 838.6 850 52.0
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.4e-238 827.8 1061 44.8
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 3.5e-236 822.4 769 56.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.4e-215 752.7 725 54.3
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.1e-200 703.0 674 58.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.5e-197 694.1 627 58.5
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.1e-196 690.3 620 58.4
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.8e-190 669.5 422 77.5
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.0e-170 604.0 750 47.3
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.8e-162 575.9 368 76.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.3e-161 572.0 414 70.0
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-155 554.7 389 71.5
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 3.0e-150 537.0 495 59.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.4e-125 452.6 315 69.5
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.6e-122 444.1 292 72.9
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 5.5e-120 436.4 558 45.5
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.1e-119 434.5 294 69.4
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 2.1e-119 434.5 607 44.2
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.0e-115 419.1 698 39.3
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.3e-108 396.4 461 50.1
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 4.1e-107 393.7 346 55.8
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.9e-96 358.2 216 78.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.1e-95 354.8 309 58.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.9e-56 225.3 157 69.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.6e-49 199.9 139 64.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 7.3e-48 196.8 136 69.1
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.1e-43 181.0 194 48.5
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.3e-33 148.7 116 63.8
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.3e-32 144.8 109 64.2
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-29 136.3 76 84.2
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 7.6e-29 133.7 149 47.7
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.8e-28 131.3 283 36.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.3e-25 122.1 86 65.1
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.1e-23 115.5 96 56.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.6e-18 99.4 66 72.7
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.7e-17 94.0 57 77.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.1e-16 93.2 160 36.9
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 7.4e-16 90.5 275 31.3
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.0e-13 82.4 56 66.1
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.4e-13 81.6 82 53.7
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.7e-10 72.0 68 50.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.7e-10 72.0 94 37.2
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 8.7e-09 67.0 62 54.8
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.1e-08 66.6 53 58.5
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.1e-08 66.6 53 58.5
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.9e-08 65.9 53 58.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 7.4e-08 63.9 51 62.7
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 1.6e-07 62.8 146 32.2
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 6.2e-07 60.8 52 59.6
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 2.4e-06 58.9 62 53.2


User provided reference genes

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