Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 0.0e+00 1885.5 1057 100.0
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 0.0e+00 1083.6 1098 62.2
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 3.6e-311 1071.6 1103 59.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 3.1e-289 998.8 1096 58.6
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.5e-280 968.8 1115 57.7
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.1e-88 331.6 1136 30.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.5e-86 325.5 1115 29.1
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 4.9e-85 320.5 1200 28.1
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 3.3e-81 307.8 1198 28.5
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 4.1e-79 300.8 1152 28.3
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 7.6e-78 296.6 1255 27.2
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 3.5e-75 287.7 1148 28.9
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.5e-69 266.5 1132 26.6
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.7e-67 261.5 1182 26.8
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 7.9e-67 260.0 1106 26.9
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.0e-66 259.6 1154 28.4
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.3e-66 258.5 1291 25.8
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 8.8e-66 256.5 1261 26.0
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.1e-65 256.1 1170 27.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.1e-65 256.1 1131 27.2
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 3.7e-64 251.1 1161 28.1
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 4.8e-64 250.8 1096 27.6
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.1e-63 249.6 1161 27.2
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.8e-63 248.8 1082 28.4
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.2e-62 246.1 1116 27.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.4e-62 244.6 1174 26.8
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.0e-61 243.0 1122 26.8
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 8.5e-61 240.0 1214 26.5
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.5e-61 240.0 1215 26.6
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.9e-60 238.8 1225 26.0
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.9e-60 238.8 1177 25.9
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 7.2e-60 236.9 1119 27.8
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.2e-59 236.1 1087 27.8
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.6e-59 235.7 1125 26.5
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.3e-58 231.9 1144 27.9
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.3e-56 226.1 1306 24.6
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.8e-56 224.9 586 34.8
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.7e-56 224.6 1082 26.3
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.3e-56 223.8 1291 24.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 3.1e-55 221.5 1142 26.6
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.1e-55 221.5 1075 25.9
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 4.1e-55 221.1 1089 26.4
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 9.1e-55 219.9 1092 26.1
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.5e-52 212.6 1101 25.5
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.2e-51 209.5 1086 27.1
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.2e-51 209.5 279 45.9
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.6e-51 208.0 1087 25.7
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 8.8e-50 203.4 1116 25.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-49 203.0 1074 25.8
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.8e-48 198.4 1106 25.6
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.8e-48 197.6 781 29.2
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.0e-47 193.7 486 34.2
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.1e-47 193.4 393 37.4
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.6e-46 192.6 1100 25.4
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.5e-46 191.0 1073 25.3
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.5e-46 191.0 1066 25.2
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.9e-45 188.3 1088 26.5
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.9e-45 188.3 1125 28.3
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 3.8e-45 188.0 1128 28.5
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 5.0e-45 187.6 757 29.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.5e-45 187.2 1079 25.1
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-44 186.4 1085 26.4
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 4.7e-43 181.0 1088 25.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.2e-41 176.4 801 27.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.5e-41 173.7 805 27.6
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-40 172.6 1080 25.2
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 2.8e-40 171.8 1166 25.4
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 9.1e-39 166.8 523 30.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 9.1e-39 166.8 276 41.7
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 2.7e-38 165.2 452 33.8
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 2.7e-38 165.2 1113 24.5
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 7.7e-38 163.7 1113 23.7
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-37 162.5 802 27.4
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.4e-36 156.8 461 32.1
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.2e-35 156.4 691 26.9
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-35 156.0 233 43.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.6e-35 156.0 230 43.5
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 4.7e-35 154.5 440 33.4
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 6.1e-35 154.1 1207 23.6
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.3e-34 152.1 1091 24.5
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.3e-34 152.1 413 32.7
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 7.7e-30 137.1 166 50.0
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.0e-29 136.7 1100 22.7
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 2.5e-28 132.1 394 32.0
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 9.5e-28 130.2 1132 23.1
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.1e-27 129.0 1151 23.2
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.8e-27 128.6 364 36.8
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.0e-26 124.8 293 37.2
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 6.8e-26 124.0 1098 23.4
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.6e-25 122.1 816 25.4
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.3e-24 119.8 1102 22.7
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 2.9e-24 118.6 899 23.4
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 3.2e-23 115.2 149 42.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.2e-23 115.2 269 37.9
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.0e-21 108.6 121 47.1
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 8.6e-21 107.1 237 37.1
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.1e-20 106.7 104 51.9
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 3.3e-20 105.1 230 37.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 9.5e-20 103.6 264 34.5
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.6e-19 102.8 108 50.0
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 3.1e-18 98.6 94 50.0
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 5.2e-18 97.8 1132 21.6
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-17 96.3 272 35.3
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.0e-17 95.9 119 47.9
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.4e-17 95.1 433 27.5
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 9.8e-17 93.6 154 38.3
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.2e-15 88.6 116 40.5
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.1e-15 88.2 147 40.1
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.2e-14 86.7 64 56.2
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 3.5e-14 85.1 122 40.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.6e-14 84.7 107 43.9
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 6.0e-14 84.3 187 32.6
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 7.8e-14 84.0 137 40.1
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 7.8e-14 84.0 855 23.5
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 3.0e-13 82.0 194 33.0
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.0e-13 82.0 181 34.3
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 3.9e-13 81.6 181 34.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 6.6e-13 80.9 199 32.2
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.9e-12 79.3 126 38.9
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.5e-12 79.0 63 52.4
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.3e-12 78.6 178 32.6
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.3e-12 78.6 170 31.8
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 7.3e-12 77.4 181 33.1
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 3.6e-11 75.1 123 38.2
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 3.6e-11 75.1 123 38.2
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 6.2e-11 74.3 152 37.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 6.2e-11 74.3 129 35.7
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 6.2e-11 74.3 94 40.4
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.3e-10 72.4 168 31.5
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 3.1e-10 72.0 128 37.5
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 8.9e-10 70.5 170 32.4
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.2e-09 70.1 126 34.9
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.2e-09 70.1 170 31.2
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 3.4e-09 68.6 58 48.3
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 4.4e-09 68.2 171 31.0
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 4.4e-09 68.2 153 34.0
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.1e-07 63.5 100 37.0
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.9e-07 62.8 55 50.9
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.6e-06 59.7 31 67.7
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.1e-06 59.3 1077 21.0
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 2.7e-06 58.9 1074 21.3
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 6.0e-06 57.8 189 28.6


User provided reference genes

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