Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 0.0e+00 1852.8 919 100.0
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 0.0e+00 1338.2 968 71.2
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 0.0e+00 1323.5 962 73.3
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 0.0e+00 1320.1 973 70.6
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1101.7 990 60.6
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 2.8e-310 1068.5 981 58.3
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 6.2e-310 1067.4 989 58.5
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 1.7e-307 1059.3 933 59.3
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 5.4e-306 1054.3 1018 56.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 4.6e-305 1051.2 942 62.1
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.3e-304 1049.7 949 59.3
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 3.0e-304 1048.5 990 57.9
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 4.3e-303 1044.6 960 58.6
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 5.3e-301 1037.7 1001 56.4
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 2.6e-300 1035.4 998 58.2
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 2.2e-299 1032.3 1022 54.8
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 8.4e-299 1030.4 912 60.6
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 5.5e-298 1027.7 985 55.6
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 7.1e-298 1027.3 983 55.5
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 2.1e-297 1025.8 1007 55.6
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 3.5e-297 1025.0 975 56.4
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 4.6e-297 1024.6 990 57.0
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 3.0e-296 1021.9 954 58.6
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 3.9e-296 1021.5 954 58.6
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 6.7e-296 1020.8 991 55.7
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 1.5e-295 1019.6 973 57.0
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.6e-294 1016.1 970 56.0
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 3.1e-293 1011.9 935 57.2
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 9.0e-293 1010.4 1007 53.9
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 3.4e-292 1008.4 962 56.2
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.0e-291 1006.9 989 56.5
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.3e-288 996.5 986 57.6
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.8e-288 996.1 953 56.8
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 5.1e-288 994.6 1013 55.0
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.5e-287 993.0 938 56.7
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 7.4e-287 990.7 979 54.7
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 6.3e-286 987.6 1004 53.8
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.4e-285 985.7 953 57.1
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.4e-285 985.7 1025 52.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 5.3e-285 984.6 1005 53.8
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 6.5e-283 977.6 1035 53.9
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.1e-282 976.9 990 53.6
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-282 976.1 990 53.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 5.5e-282 974.5 951 56.6
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 3.6e-281 971.8 978 55.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 4.6e-281 971.5 990 53.4
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 1.9e-279 966.1 908 57.3
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 2.5e-279 965.7 1019 52.5
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.8e-278 962.2 990 52.8
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 6.3e-278 961.1 979 56.0
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.4e-277 959.9 990 53.0
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 5.5e-274 948.0 906 58.5
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 2.1e-273 946.0 982 54.9
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 5.7e-271 937.9 878 57.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.7e-271 937.2 878 57.5
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 2.4e-269 932.6 964 54.4
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 4.1e-269 931.8 957 54.4
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.0e-268 929.5 933 54.0
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.4e-268 928.7 791 60.6
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.4e-266 923.3 946 54.0
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 1.9e-266 922.9 977 53.5
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 7.2e-266 921.0 954 54.2
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 9.4e-266 920.6 986 52.0
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.1e-265 919.5 963 53.6
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 1.5e-263 913.3 933 56.1
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 2.6e-263 912.5 932 53.9
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 2.8e-262 909.1 1024 52.6
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 6.3e-262 907.9 992 51.8
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 5.5e-258 894.8 1018 52.6
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 9.4e-258 894.0 948 54.1
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 4.7e-257 891.7 817 57.0
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.3e-256 889.4 958 52.9
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 1.1e-253 880.6 832 55.2
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 1.2e-247 860.5 837 55.4
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.5e-247 860.1 827 55.4
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 6.5e-243 844.7 984 49.1
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.3e-238 830.5 971 47.7
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.3e-238 830.5 971 47.7
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 2.8e-238 829.3 924 50.3
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.1e-237 827.4 985 48.1
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 7.0e-237 824.7 971 47.8
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 7.0e-237 824.7 980 49.1
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.6e-236 823.5 998 49.7
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.7e-236 822.8 985 49.9
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 6.6e-235 818.1 984 48.0
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 5.6e-234 815.1 990 47.8
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.2e-233 813.9 990 47.7
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 4.7e-233 812.0 979 47.4
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 2.0e-231 806.6 973 48.0
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 5.7e-231 805.1 971 49.1
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 2.2e-230 803.1 800 53.2
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.7e-230 802.4 781 54.5
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 3.5e-228 795.8 973 48.7
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 7.8e-228 794.7 971 46.8
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.8e-224 781.6 666 59.9
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.9e-224 781.2 738 54.9
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.1e-216 757.7 756 53.7
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.5e-215 753.8 973 47.1
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.5e-210 736.5 976 43.8
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.8e-201 706.4 551 61.5
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.8e-198 696.0 590 58.1
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.9e-195 686.0 543 62.8
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.8e-193 679.9 552 60.0
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 4.5e-183 646.0 607 54.2
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.8e-137 493.8 388 61.1
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.2e-134 484.2 471 50.7
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.7e-132 477.2 667 43.9
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 2.4e-120 437.6 404 54.5
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 6.8e-99 366.3 471 53.9
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.2e-80 304.3 457 43.8
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.2e-71 275.8 390 51.3
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.6e-61 240.4 329 39.2
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.1e-46 190.7 157 54.1
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.1e-45 189.5 244 48.8
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.1e-45 189.5 244 48.8
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.3e-44 183.7 374 33.2
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.3e-44 183.7 374 33.2
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.2e-44 183.3 374 32.9
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.3e-43 180.6 374 32.6
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.9e-39 166.8 194 49.5
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 1.4e-32 146.0 409 30.6
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 7.2e-32 143.7 397 29.2
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.7e-29 133.3 315 31.7
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-16 93.2 290 28.6
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.4e-16 90.1 291 27.5
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.4e-16 90.1 380 26.1
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 6.8e-14 84.0 65 63.1
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.8e-11 75.9 353 25.2
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.3e-09 69.7 90 47.8
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.5e-08 65.5 145 29.7
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 1.4e-06 59.7 128 32.0
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 1.8e-06 59.3 142 27.5
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 1.8e-06 59.3 85 37.6
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 3.0e-06 58.5 149 31.5
Eucgr.D01036 Eucalyptus grandis HOM05D003725 ORTHO05D004294 3.0e-06 58.5 132 29.5
Nn5g27072 Nelumbo nucifera HOM05D006943 ORTHO05D008565 3.0e-06 58.5 77 36.4
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 4.0e-06 58.2 123 31.7
CBR_g29752 Chara braunii HOM05D000601 ORTHO05D000407 5.2e-06 57.8 97 35.1


User provided reference genes

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