Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 5.6e-44 180.6 97 100.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 6.9e-18 94.0 85 65.9
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.9e-13 78.2 85 54.1
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 7.4e-12 73.9 80 57.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.6e-11 72.8 78 55.1
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.8e-11 72.0 80 55.0
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.7e-11 71.6 78 61.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 4.8e-11 71.2 76 53.9
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 4.8e-11 71.2 81 55.6
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.8e-10 69.3 75 58.7
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.8e-10 69.3 73 57.5
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.8e-10 69.3 89 51.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.4e-10 68.9 74 56.8
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.1e-10 68.2 76 52.6
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.3e-10 67.8 77 55.8
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.3e-10 67.8 79 49.4
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.9e-10 67.4 71 57.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.9e-10 67.4 71 57.7
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 9.0e-10 67.0 80 50.0
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 9.0e-10 67.0 80 53.8
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 9.0e-10 67.0 76 51.3
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 9.0e-10 67.0 86 53.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.2e-09 66.6 77 54.5
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.2e-09 66.6 71 56.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.5e-09 66.2 75 54.7
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.0e-09 65.9 78 48.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-09 65.9 77 57.1
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.0e-09 65.9 74 52.7
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.6e-09 65.5 65 58.5
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.6e-09 65.5 70 54.3
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.4e-09 65.1 68 55.9
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.4e-09 65.1 74 51.4
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.4e-09 65.1 76 48.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.5e-09 64.7 86 55.8
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 5.9e-09 64.3 78 48.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.9e-09 64.3 74 54.1
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 5.9e-09 64.3 75 56.0
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 7.6e-09 63.9 68 57.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 7.6e-09 63.9 88 53.4
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 7.6e-09 63.9 73 54.8
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.6e-09 63.9 68 54.4
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.0e-08 63.5 80 47.5
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.0e-08 63.5 80 47.5
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.0e-08 63.5 82 46.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-08 63.2 60 61.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.3e-08 63.2 71 53.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 74 52.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.7e-08 62.8 73 53.4
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.2e-08 62.4 71 52.1
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.2e-08 62.4 66 59.1
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.2e-08 62.4 78 48.7
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.9e-08 62.0 79 48.1
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.9e-08 62.0 75 58.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.9e-08 62.0 75 52.0
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.9e-08 62.0 71 56.3
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.9e-08 62.0 69 53.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.8e-08 61.6 68 55.9
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.8e-08 61.6 49 65.3
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.8e-08 61.6 67 58.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 5.0e-08 61.2 76 53.9
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 5.0e-08 61.2 70 57.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.0e-08 61.2 70 52.9
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.5e-08 60.8 66 54.5
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 6.5e-08 60.8 65 58.5
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.5e-08 60.8 74 55.4
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 6.5e-08 60.8 70 55.7
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 8.5e-08 60.5 71 50.7
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 8.5e-08 60.5 72 55.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.5e-08 60.5 67 56.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.5e-08 60.5 69 52.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 8.5e-08 60.5 67 55.2
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.1e-07 60.1 71 53.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-07 59.7 80 46.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-07 59.7 80 46.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.4e-07 59.7 60 63.3
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.4e-07 59.7 73 54.8
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.9e-07 59.3 78 53.8
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-07 59.3 67 56.7
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-07 59.3 67 56.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.9e-07 59.3 67 56.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.9e-07 59.3 66 56.1
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.5e-07 58.9 69 55.1
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.2e-07 58.5 66 56.1
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 3.2e-07 58.5 75 46.7
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.2e-07 58.5 73 56.2
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.2e-07 58.5 81 46.9
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.2e-07 58.5 64 56.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.2e-07 58.2 81 50.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.2e-07 58.2 64 56.2
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.2e-07 58.2 58 62.1
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 4.2e-07 58.2 66 56.1
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 5.5e-07 57.8 68 54.4
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 5.5e-07 57.8 60 60.0
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.5e-07 57.8 83 43.4
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 7.2e-07 57.4 66 53.0
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 9.3e-07 57.0 69 52.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 9.3e-07 57.0 80 50.0
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 9.3e-07 57.0 60 60.0
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.2e-06 56.6 66 56.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.2e-06 56.6 70 48.6
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.6e-06 56.2 62 58.1
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.6e-06 56.2 79 50.6
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.6e-06 56.2 81 50.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.6e-06 56.2 73 52.1
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.1e-06 55.8 66 56.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 2.1e-06 55.8 78 52.6
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.6e-06 55.1 69 52.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.6e-06 55.1 66 53.0
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 3.6e-06 55.1 75 48.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.6e-06 54.7 73 49.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 4.6e-06 54.7 60 51.7
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 4.6e-06 54.7 71 47.9
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 6.1e-06 54.3 59 57.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 6.1e-06 54.3 69 50.7
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.1e-06 54.3 66 54.5
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.1e-06 54.3 66 54.5
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 6.1e-06 54.3 69 52.2
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 6.1e-06 54.3 69 52.2
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 6.1e-06 54.3 68 50.0
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 6.1e-06 54.3 69 50.7
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.9e-06 53.9 73 49.3
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 7.9e-06 53.9 65 53.8
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 7.9e-06 53.9 84 44.0


User provided reference genes

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