Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 5.7e-72 274.2 149 100.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 4.2e-67 258.1 149 93.3
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 5.5e-67 257.7 149 93.3
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 8.0e-66 253.8 149 92.6
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 81.4
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.4e-56 221.9 145 82.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 7.5e-56 220.7 143 80.4
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 78.4
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.3e-55 219.9 146 79.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.7e-55 219.5 145 79.3
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.9e-55 218.8 148 80.4
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 3.7e-55 218.4 146 79.5
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 3.7e-55 218.4 145 78.6
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 4.9e-55 218.0 146 80.8
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 8.3e-55 217.2 145 80.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 8.3e-55 217.2 146 78.8
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 8.3e-55 217.2 139 82.0
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 77.9
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.1e-54 216.9 139 79.9
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.4e-54 216.5 148 76.4
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.4e-54 216.5 145 80.0
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.4e-54 216.5 146 78.1
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-54 216.1 148 76.4
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.8e-54 216.1 149 79.2
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.4e-54 215.7 148 75.7
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 3.2e-54 215.3 145 79.3
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 3.2e-54 215.3 145 79.3
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.2e-54 215.3 139 80.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 4.1e-54 214.9 137 83.2
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 5.4e-54 214.5 146 76.7
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 5.4e-54 214.5 139 82.7
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 5.4e-54 214.5 137 83.9
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 7.0e-54 214.2 148 76.4
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 7.0e-54 214.2 137 83.2
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 9.2e-54 213.8 147 79.6
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 9.2e-54 213.8 147 79.6
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 9.2e-54 213.8 146 79.5
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 9.2e-54 213.8 145 78.6
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 9.2e-54 213.8 143 79.0
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 9.2e-54 213.8 143 79.0
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 9.2e-54 213.8 146 79.5
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 9.2e-54 213.8 145 79.3
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.2e-53 213.4 145 78.6
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.2e-53 213.4 145 77.9
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.2e-53 213.4 148 75.7
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 2.7e-53 212.2 137 82.5
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.7e-53 212.2 149 75.8
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.5e-53 211.8 149 78.5
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.5e-53 211.8 144 77.1
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 3.5e-53 211.8 148 75.7
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 4.6e-53 211.5 148 76.4
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 4.6e-53 211.5 147 78.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 4.6e-53 211.5 149 79.2
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 4.6e-53 211.5 139 79.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.6e-53 211.5 146 76.7
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 4.6e-53 211.5 146 78.1
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 4.6e-53 211.5 139 81.3
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 6.0e-53 211.1 146 78.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 7.8e-53 210.7 145 77.9
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 7.8e-53 210.7 137 81.0
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.0e-52 210.3 146 74.7
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.7e-52 209.5 137 81.0
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.7e-52 209.5 145 78.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 6.6e-52 207.6 140 77.9
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 8.6e-52 207.2 138 78.3
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 8.6e-52 207.2 138 78.3
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 8.6e-52 207.2 139 77.0
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 8.6e-52 207.2 145 73.8
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.1e-51 206.8 143 76.2
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.5e-51 206.5 145 77.9
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.5e-51 206.5 142 77.5
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.5e-51 206.5 142 77.5
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.9e-51 206.1 141 75.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.5e-51 205.7 148 76.4
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 2.5e-51 205.7 144 77.8
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 2.5e-51 205.7 146 75.3
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-51 205.3 142 77.5
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.3e-51 205.3 145 76.6
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 4.3e-51 204.9 142 77.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.3e-51 204.9 142 77.5
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 5.6e-51 204.5 148 77.7
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.5e-51 203.8 145 76.6
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.2e-50 203.4 147 72.8
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.1e-50 202.6 143 75.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 2.8e-50 202.2 144 74.3
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.8e-50 202.2 147 71.4
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.6e-50 201.8 144 73.6
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.7e-50 201.4 145 73.8
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.7e-50 201.4 142 76.1
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 4.7e-50 201.4 142 76.1
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 8.0e-50 200.7 140 75.0
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.1e-49 200.3 140 75.0
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.1e-49 200.3 148 71.6
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.4e-49 199.9 142 74.6
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.3e-49 199.1 147 70.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 3.1e-49 198.7 148 70.3
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.1e-49 198.7 137 76.6
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 5.2e-49 198.0 145 72.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 6.8e-49 197.6 140 76.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.4e-48 195.3 135 76.3
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 5.8e-48 194.5 137 74.5
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 5.8e-48 194.5 137 74.5
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.7e-47 193.0 148 69.6
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.2e-47 192.6 145 73.1
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 3.7e-47 191.8 148 68.9
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.4e-47 191.0 124 83.9
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 5.4e-46 188.0 143 70.6
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-45 186.0 136 70.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.0e-45 186.0 136 70.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.0e-45 186.0 136 70.6
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 4.6e-45 184.9 136 69.1
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 6.0e-45 184.5 139 69.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.0e-44 183.7 139 70.5
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.3e-44 183.3 135 68.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 3.0e-44 182.2 136 69.1
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.0e-44 181.4 120 79.2
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 6.6e-44 181.0 136 68.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 8.6e-44 180.6 134 70.1
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 8.6e-44 180.6 139 67.6
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.1e-43 180.3 136 66.9
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.9e-43 179.5 136 66.9
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.9e-43 179.5 135 68.1
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 2.5e-43 179.1 139 69.1
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.6e-42 176.4 138 67.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 6.2e-42 174.5 136 68.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 6.2e-42 174.5 136 68.4
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.3e-41 172.6 145 64.1
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 4.0e-41 171.8 139 67.6
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 5.2e-41 171.4 139 66.9
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 8.9e-41 170.6 145 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.4e-40 168.7 142 62.7
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.4e-40 168.3 117 75.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 9.9e-40 167.2 136 64.7
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.5e-37 158.7 139 62.6
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 4.3e-35 151.8 138 58.0
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 8.1e-34 147.5 133 60.9
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.5e-32 143.3 134 61.9
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 9.9e-32 140.6 108 63.9
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.0e-28 130.6 140 55.7
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 6.2e-26 121.3 90 72.2
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.9e-23 111.7 106 60.4
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 7.1e-22 107.8 141 41.8
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.6e-21 105.1 96 59.4
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 5.1e-20 101.7 141 42.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.6e-13 80.1 46 84.8
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.6e-13 78.6 90 46.7


User provided reference genes

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