Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 2522.7 1264 100.0
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 2003.4 1272 80.0
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 2002.3 1275 79.8
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 1842.4 1170 80.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1178.3 1299 51.9
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1172.5 1300 51.9
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1151.7 1323 49.4
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1130.9 1309 48.4
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1128.2 1321 49.5
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1125.2 1322 48.3
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1104.0 1334 46.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1100.1 1315 47.5
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1098.6 1304 47.9
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1096.6 1332 46.8
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1080.9 1338 47.5
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 8.6e-310 1067.4 1330 47.4
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 3.0e-307 1058.9 1326 47.1
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 8.3e-305 1050.8 1322 46.7
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 3.1e-304 1048.9 1325 46.7
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.7e-302 1043.1 1320 46.1
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 3.8e-302 1042.0 1332 46.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 1.5e-301 1040.0 1330 46.3
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 6.1e-300 1034.6 1320 45.9
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.4e-298 1028.5 1316 46.3
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 1.6e-295 1020.0 1331 46.4
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 3.5e-295 1018.8 1300 46.5
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.8e-295 1017.7 1332 45.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.7e-294 1016.5 1331 46.4
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.6e-294 1014.6 1289 46.6
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 6.6e-294 1014.6 1311 45.8
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.9e-289 998.4 1311 44.2
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 3.5e-287 992.3 1311 44.9
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.3e-286 990.3 1319 45.3
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.7e-284 981.9 1307 44.0
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 2.3e-283 979.5 1222 48.1
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 4.4e-282 975.3 1229 46.1
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.3e-278 963.0 1303 43.7
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.3e-277 958.7 1315 44.5
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 1.2e-274 950.7 1429 40.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.9e-273 945.3 1297 43.9
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 9.2e-272 941.0 1288 43.5
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 2.1e-271 939.9 1302 43.8
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 6.6e-270 934.9 1304 42.8
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 2.0e-266 923.3 1306 42.0
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 3.9e-262 909.1 1296 42.4
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 9.0e-259 897.9 1292 41.9
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 3.4e-258 896.0 1292 42.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 7.6e-258 894.8 1287 41.9
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 6.4e-257 891.7 1305 41.8
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 6.4e-257 891.7 1343 43.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 7.9e-255 884.8 1294 42.3
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.7e-254 883.6 1329 41.1
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 9.6e-253 877.9 1283 41.7
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 2.1e-252 876.7 1314 42.3
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 6.2e-252 875.2 1284 42.6
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 8.4e-249 864.8 1235 43.2
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.8e-246 857.1 1327 40.8
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 7.4e-245 851.7 1229 41.7
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 4.8e-244 849.0 1325 40.8
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 8.1e-244 848.2 1203 42.1
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.1e-243 846.3 1324 40.8
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 7.6e-242 841.6 1234 42.1
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 8.4e-241 838.2 1262 40.6
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.1e-240 837.8 1313 40.4
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 4.2e-240 835.9 1244 41.2
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.8e-238 830.5 1271 41.2
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 8.2e-236 821.6 1328 39.6
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 3.1e-235 819.7 1156 43.1
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 3.5e-231 806.2 1294 40.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.1e-229 801.2 1332 39.3
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.5e-221 773.5 1313 38.5
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.2e-218 764.6 1277 38.7
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 7.4e-213 745.3 1270 38.9
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.0e-206 723.4 1321 37.9
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.8e-201 706.4 1302 37.6
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 9.8e-197 691.8 1251 38.9
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.8e-190 671.0 1052 40.3
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.5e-189 667.9 1285 36.0
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 2.6e-189 667.2 1300 36.2
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.7e-185 654.4 1272 36.2
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 8.6e-185 652.1 1237 36.6
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.1e-183 647.5 1156 38.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 8.0e-175 619.0 1214 35.7
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.9e-172 610.5 1261 34.6
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 3.2e-171 607.1 692 50.7
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 3.3e-168 597.0 1251 34.5
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 9.5e-168 595.5 1246 34.8
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.1e-166 592.0 711 49.6
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.8e-166 589.3 1219 35.6
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.2e-165 588.6 1126 35.7
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 8.6e-161 572.4 1272 33.6
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.4e-155 555.1 677 48.2
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 3.6e-151 540.4 1129 34.8
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 3.1e-150 537.3 703 46.4
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.8e-133 479.9 750 40.4
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.8e-132 477.2 770 39.4
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 5.8e-125 453.4 708 42.9
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.2e-122 445.7 630 39.5
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 6.0e-122 443.4 603 43.6
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.9e-120 438.3 550 43.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.4e-107 395.6 708 40.1
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.3e-104 384.4 699 35.6
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 6.5e-92 343.6 337 53.4
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.0e-89 336.3 677 38.4
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 8.2e-87 326.6 621 37.7
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.7e-85 321.6 852 29.7
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.0e-84 317.4 682 35.6
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.3e-76 292.0 801 28.2
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.4e-64 251.1 617 31.3
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 8.3e-63 246.9 334 41.3
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.5e-59 235.3 806 26.7
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.8e-41 174.1 287 38.7
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 9.2e-38 163.7 545 31.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 7.8e-37 160.6 165 53.3
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 3.3e-35 155.2 517 32.9
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 2.8e-26 125.6 267 28.8
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.2e-26 124.4 451 24.4
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 5.8e-24 117.9 432 24.3
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.7e-23 116.3 115 52.2
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 7.9e-21 107.5 534 28.8
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.3e-20 106.7 448 30.6
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.3e-18 100.1 291 35.1
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.3e-18 100.1 291 35.1
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.7e-18 98.6 490 28.2
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 3.7e-18 98.6 490 28.2
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 8.1e-18 97.4 209 34.9
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.8e-17 96.3 499 28.1
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.1e-17 95.5 532 26.3
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 3.4e-16 92.0 143 36.4
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.3e-15 90.1 465 28.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.3e-15 90.1 465 28.2
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.1e-13 82.8 500 26.6
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 8.7e-12 77.4 107 33.6
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.1e-11 77.0 513 23.6
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.5e-11 76.6 324 23.5
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.1e-10 72.8 299 22.7
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.8e-10 72.4 80 47.5
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 6.9e-09 67.8 100 42.0
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 8.4e-07 60.8 492 24.6


User provided reference genes

Program Settings