Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018546 Sechium edule HOM05D004866 ORTHO05D005716 3.4e-83 311.6 156 100.0
ClCG11G008070 Citrullus lanatus HOM05D004866 ORTHO05D005716 2.5e-33 146.0 130 65.4
MELO3C008127.2 Cucumis melo HOM05D004866 ORTHO05D005716 3.7e-29 132.1 130 60.8
CsaV3_2G033540 Cucumis sativus L. HOM05D004866 ORTHO05D005716 6.9e-28 127.9 130 58.5
Sed0013291 Sechium edule HOM05D004866 ORTHO05D005716 2.9e-26 122.5 110 60.9
Haze_22514 Corylus avellana HOM05D004866 ORTHO05D005716 2.5e-17 92.8 106 48.1
TWI34G1187 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 9.4e-17 90.9 109 48.6
CiPaw.08G058600 Carya illinoinensis HOM05D004866 ORTHO05D005716 3.6e-16 89.0 110 48.2
TWI60G1141 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 1.0e-15 87.4 109 46.8
Thecc.08G185100 Theobroma cacao HOM05D004866 ORTHO05D005716 1.4e-15 87.0 135 43.0
QL02p033402 Quercus lobata HOM05D004866 ORTHO05D005716 2.3e-15 86.3 105 44.8
Cfa013842 Carpinus fangiana HOM05D004866 ORTHO05D005716 3.9e-15 85.5 106 47.2
TAR624G1235 Trochodendron aralioides HOM05D004866 ORTHO05D005716 3.9e-15 85.5 113 46.0
Dinv15070 Davidia involucrata HOM05D004866 ORTHO05D005716 8.8e-15 84.3 106 46.2
MBI09_g41429_MAGBIO Magnolia biondii HOM05D004866 ORTHO05D005716 2.6e-14 82.8 133 42.9
Aqoxy5G02452 Aquilegia oxysepala HOM05D004866 ORTHO05D005716 1.3e-13 80.5 133 41.4
Ciclev10001144m.g Citrus clementina HOM05D004866 ORTHO05D005716 1.3e-13 80.5 110 45.5
Duzib211G0074 Durio zibethinus HOM05D004866 ORTHO05D005716 1.7e-13 80.1 127 39.4
Manes.02G192700 Manihot esculenta HOM05D004866 ORTHO05D005716 2.2e-13 79.7 106 45.3
Thecc.08G184800 Theobroma cacao HOM05D004866 ORTHO05D005716 2.2e-13 79.7 109 47.7
CANSAT25G2412 Cannabis sativa HOM05D004866 ORTHO05D005716 3.7e-13 79.0 129 42.6
Eucgr.C02238 Eucalyptus grandis HOM05D004866 ORTHO05D005716 3.7e-13 79.0 105 40.0
TAR628G0891 Trochodendron aralioides HOM05D004866 ORTHO05D005716 4.8e-13 78.6 111 41.4
Cpa.g.sc66.31 Carica papaya HOM05D004866 ORTHO05D005716 1.1e-12 77.4 102 41.2
Sabra19G0093900 Salix brachista HOM05D004866 ORTHO05D005716 1.4e-12 77.0 102 41.2
TPR.G15688 Trifolium pratense HOM05D004866 ORTHO05D005716 1.8e-12 76.6 136 39.0
Duzib211G0502 Durio zibethinus HOM05D004866 ORTHO05D005716 2.4e-12 76.3 109 45.9
Potri.013G111400 Populus trichocarpa HOM05D004866 ORTHO05D005716 3.1e-12 75.9 106 40.6
Medtr1g096790 Medicago truncatula HOM05D004866 ORTHO05D005716 4.1e-12 75.5 136 40.4
THA.LOC104816334 Tarenaya hassleriana HOM05D004866 ORTHO05D005716 4.1e-12 75.5 110 43.6
Lj5g0015319 Lotus japonicus HOM05D004866 ORTHO05D005716 5.3e-12 75.1 134 37.3
Phvul.007G088500 Phaseolus vulgaris HOM05D004866 ORTHO05D005716 7.0e-12 74.7 109 44.0
PGR042G1785 Punica granatum HOM05D004866 ORTHO05D005716 7.0e-12 74.7 110 43.6
A05p23590 Brassica napus HOM05D004866 ORTHO05D005716 9.1e-12 74.3 94 43.6
BolC5t32456H Brassica oleracea HOM05D004866 ORTHO05D005716 9.1e-12 74.3 94 43.6
BraA05t21227Z Brassica rapa HOM05D004866 ORTHO05D005716 9.1e-12 74.3 94 43.6
CSS0004253 Camellia sinensis var. sinensis HOM05D004866 ORTHO05D005716 9.1e-12 74.3 128 38.3
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 1.2e-11 73.9 104 44.2
AT1G35620 Arabidopsis thaliana HOM05D004866 ORTHO05D005716 1.2e-11 73.9 132 38.6
BcaC05g27723 Brassica carinata HOM05D004866 ORTHO05D005716 1.2e-11 73.9 94 42.6
C05p37040 Brassica napus HOM05D004866 ORTHO05D005716 1.2e-11 73.9 94 42.6
Carub.0001s3321 Capsella rubella HOM05D004866 ORTHO05D005716 1.2e-11 73.9 131 38.9
Actinidia02574 Actinidia chinensis HOM05D004866 ORTHO05D005716 1.6e-11 73.6 106 44.3
Thhalv10010385m.g Eutrema salsugineum HOM05D004866 ORTHO05D005716 1.6e-11 73.6 101 45.5
PSO017G5284 Papaver somniferum HOM05D004866 ORTHO05D005716 2.0e-11 73.2 111 39.6
Potri.019G082400 Populus trichocarpa HOM05D004866 ORTHO05D005716 2.0e-11 73.2 102 41.2
Atru.chr13.1733 Acer truncatum HOM05D004866 ORTHO05D005716 2.6e-11 72.8 104 44.2
VMungo0720G1828 Vigna mungo HOM05D004866 ORTHO05D005716 2.6e-11 72.8 110 42.7
ATR0752G218 Amborella trichopoda HOM05D004866 ORTHO05D005716 3.5e-11 72.4 111 39.6
CiPaw.07G160700 Carya illinoinensis HOM05D004866 ORTHO05D005716 3.5e-11 72.4 106 43.4
Peaxi162Scf00268g01017 Petunia axillaris HOM05D004866 ORTHO05D005716 3.5e-11 72.4 100 42.0
Sp1g30340 Schrenkiella parvula HOM05D004866 ORTHO05D005716 3.5e-11 72.4 94 43.6
PGSC0003DMG400026074 Solanum tuberosum HOM05D004866 ORTHO05D005716 4.5e-11 72.0 104 41.3
MD08G1220700 Malus domestica HOM05D004866 ORTHO05D005716 5.9e-11 71.6 131 40.5
MD09G1249700 Malus domestica HOM05D004866 ORTHO05D005716 5.9e-11 71.6 131 40.5
Rhsim11G0058000 Rhododendron simsii HOM05D004866 ORTHO05D005716 5.9e-11 71.6 106 41.5
Rhsim11G0058200 Rhododendron simsii HOM05D004866 ORTHO05D005716 5.9e-11 71.6 106 41.5
BcaB03g13658 Brassica carinata HOM05D004866 ORTHO05D005716 7.7e-11 71.2 94 43.6
Lalb_Chr02g0141731 Lupinus albus HOM05D004866 ORTHO05D005716 7.7e-11 71.2 110 42.7
Lalb_Chr03g0036111 Lupinus albus HOM05D004866 ORTHO05D005716 7.7e-11 71.2 111 39.6
Lalb_Chr06g0161961 Lupinus albus HOM05D004866 ORTHO05D005716 1.0e-10 70.9 110 41.8
Nitab4.5_0006657g0010 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.0e-10 70.9 106 41.5
Prupe.1G557400 Prunus persica HOM05D004866 ORTHO05D005716 1.0e-10 70.9 131 38.2
Sopen06g023810 Solanum pennellii HOM05D004866 ORTHO05D005716 1.0e-10 70.9 106 40.6
MD15G1411400 Malus domestica HOM05D004866 ORTHO05D005716 1.3e-10 70.5 136 34.6
Rhsim06G0094600 Rhododendron simsii HOM05D004866 ORTHO05D005716 1.3e-10 70.5 106 41.5
Gorai.006G130600 Gossypium raimondii HOM05D004866 ORTHO05D005716 1.7e-10 70.1 131 40.5
vmacro12484 Vaccinium macrocarpon HOM05D004866 ORTHO05D005716 1.7e-10 70.1 106 39.6
EL10Ac1g00092 Beta vulgaris HOM05D004866 ORTHO05D005716 2.2e-10 69.7 97 41.2
Gohir.D09G113100 Gossypium hirsutum HOM05D004866 ORTHO05D005716 2.9e-10 69.3 131 40.5
RcHm_v2.0_Chr7g0226321 Rosa chinensis HOM05D004866 ORTHO05D005716 2.9e-10 69.3 128 39.8
AUR62022699 Chenopodium quinoa HOM05D004866 ORTHO05D005716 3.8e-10 68.9 97 38.1
Nitab4.5_0000303g0220 Nicotiana tabacum HOM05D004866 ORTHO05D005716 3.8e-10 68.9 106 40.6
AUR62004637 Chenopodium quinoa HOM05D004866 ORTHO05D005716 5.0e-10 68.6 97 38.1
Gohir.A09G116000 Gossypium hirsutum HOM05D004866 ORTHO05D005716 5.0e-10 68.6 108 42.6
arahy.Tifrunner.gnm1.ann1.YL670A Arachis hypogaea HOM05D004866 ORTHO05D005716 1.1e-09 67.4 111 39.6
COL.COLO4_38510 Corchorus olitorius HOM05D004866 ORTHO05D005716 1.1e-09 67.4 92 43.5
Migut.C01261 Erythranthe guttata HOM05D004866 ORTHO05D005716 1.1e-09 67.4 57 50.9
arahy.Tifrunner.gnm1.ann1.AKH03T Arachis hypogaea HOM05D004866 ORTHO05D005716 1.5e-09 67.0 111 39.6
CAN.G199.2 Capsicum annuum HOM05D004866 ORTHO05D005716 1.5e-09 67.0 106 39.6
Cc01_g05780 Coffea canephora HOM05D004866 ORTHO05D005716 1.9e-09 66.6 106 39.6
Glyma.10G217600 Glycine max HOM05D004866 ORTHO05D005716 1.9e-09 66.6 110 39.1
CARHR034420 Cardamine hirsuta HOM05D004866 ORTHO05D005716 3.2e-09 65.9 88 38.6
Oeu037757.1 Olea europaea HOM05D004866 ORTHO05D005716 3.2e-09 65.9 109 41.3
Ah.05g178220 Amaranthus hybridus HOM05D004866 ORTHO05D005716 4.2e-09 65.5 97 40.2
FvH4_5g30970 Fragaria vesca HOM05D004866 ORTHO05D005716 7.2e-09 64.7 107 40.2
FAN04G1244 Fragaria x ananassa HOM05D004866 ORTHO05D005716 7.2e-09 64.7 107 40.2
FAN04G1967 Fragaria x ananassa HOM05D004866 ORTHO05D005716 7.2e-09 64.7 107 40.2
FAN18G3952 Fragaria x ananassa HOM05D004866 ORTHO05D005716 7.2e-09 64.7 107 40.2
HPP92_019370 Vanilla planifolia HOM05D004866 ORTHO05D005716 7.2e-09 64.7 112 36.6
Lj7C291G3 Lonicera japonica HOM05D004866 ORTHO05D005716 9.4e-09 64.3 106 38.7
Os04g0432500 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 9.4e-09 64.3 58 48.3
FAN08G2315 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.2e-08 63.9 107 42.1
Zm00001eb082680 Zea mays HOM05D004866 ORTHO05D005716 1.2e-08 63.9 58 46.6
Peaxi162Scf01013g00127 Petunia axillaris HOM05D004866 ORTHO05D005716 1.6e-08 63.5 100 39.0
FAN13G0537 Fragaria x ananassa HOM05D004866 ORTHO05D005716 2.1e-08 63.2 107 39.3
Nitab4.5_0000167g0040 Nicotiana tabacum HOM05D004866 ORTHO05D005716 2.1e-08 63.2 100 35.0
COL.COLO4_23639 Corchorus olitorius HOM05D004866 ORTHO05D005716 2.7e-08 62.8 111 42.3
DCAR_001057 Daucus carota HOM05D004866 ORTHO05D005716 3.6e-08 62.4 102 38.2
Gorai.009G289400 Gossypium raimondii HOM05D004866 ORTHO05D005716 6.1e-08 61.6 137 32.1
Gohir.D05G276400 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.0e-07 60.8 137 32.1
Oeu021211.1 Olea europaea HOM05D004866 ORTHO05D005716 1.0e-07 60.8 106 40.6
CAN.G2.14 Capsicum annuum HOM05D004866 ORTHO05D005716 1.4e-07 60.5 100 35.0
CDE04G2694 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 1.4e-07 60.5 57 47.4
Nitab4.5_0001579g0120 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.8e-07 60.1 100 36.0
SHI09019 Sapria himalayana HOM05D004866 ORTHO05D005716 2.3e-07 59.7 57 45.6
Aa31LG6G8820 Aethionema arabicum HOM05D004866 ORTHO05D005716 3.0e-07 59.3 99 40.4
SGA_v2.0_scaffold118G32519 Striga asiatica HOM05D004866 ORTHO05D005716 1.2e-06 57.4 131 33.6
PGSC0003DMG400027609 Solanum tuberosum HOM05D004866 ORTHO05D005716 2.6e-06 56.2 100 35.0
Ca_10624_v3 Cicer arietinum L. HOM05D002761 ORTHO05D005716 5.7e-06 55.1 122 38.5
HanXRQChr02g0044281 Helianthus annuus HOM05D004866 ORTHO05D005716 5.7e-06 55.1 97 37.1
SalBow7G0145 Salvia bowleyana HOM05D004866 ORTHO05D005716 5.7e-06 55.1 108 37.0
SGA_v2.0_scaffold24G10559 Striga asiatica HOM05D004866 ORTHO05D005716 5.7e-06 55.1 55 49.1


User provided reference genes

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