Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 1.0e-31 139.4 71 100.0
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 6.0e-11 70.5 65 58.5
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 7.8e-11 70.1 70 51.4
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 1.7e-10 68.9 64 51.6
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 1.7e-10 68.9 64 51.6
Sed0020724 Sechium edule HOM05D001004 ORTHO05D000653 1.7e-10 68.9 65 60.0
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.3e-10 68.6 70 50.0
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.3e-10 68.6 70 50.0
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.0e-10 68.2 64 51.6
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.1e-09 66.2 64 51.6
HanXRQChr01g0014541 Helianthus annuus HOM05D001004 ORTHO05D000653 1.9e-09 65.5 69 46.4
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 2.5e-09 65.1 64 50.0
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 3.3e-09 64.7 71 50.7
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 3.3e-09 64.7 64 53.1
CARHR181290 Cardamine hirsuta HOM05D001004 ORTHO05D000653 4.3e-09 64.3 64 48.4
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 4.3e-09 64.3 64 46.9
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 5.6e-09 63.9 64 53.1
COL.COLO4_05581 Corchorus olitorius HOM05D001004 ORTHO05D000653 7.3e-09 63.5 65 50.8
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 7.3e-09 63.5 64 48.4
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 7.3e-09 63.5 62 51.6
PSO339G6102 Papaver somniferum HOM05D001004 ORTHO05D000653 9.5e-09 63.2 55 52.7
EL10Ac5g10440 Beta vulgaris HOM05D001004 ORTHO05D000653 1.2e-08 62.8 66 48.5
DCAR_011993 Daucus carota HOM05D001004 ORTHO05D000653 1.2e-08 62.8 64 50.0
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 1.6e-08 62.4 64 54.7
vmacro02638 Vaccinium macrocarpon HOM05D001004 ORTHO05D000653 1.6e-08 62.4 64 48.4
Manes.05G086394 Manihot esculenta HOM05D001004 ORTHO05D000653 2.1e-08 62.0 64 48.4
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 2.8e-08 61.6 64 46.9
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 3.6e-08 61.2 65 47.7
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.6e-08 61.2 67 47.8
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 4.7e-08 60.8 64 42.2
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 4.7e-08 60.8 64 45.3
Sed0022274 Sechium edule HOM05D001004 ORTHO05D000653 4.7e-08 60.8 67 44.8
ClCG07G000770 Citrullus lanatus HOM05D001004 ORTHO05D000653 8.1e-08 60.1 65 47.7
GSVIVG01018139001 Vitis vinifera HOM05D001004 ORTHO05D000653 8.1e-08 60.1 72 50.0
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 1.1e-07 59.7 63 50.8
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 1.1e-07 59.7 69 44.9
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.4e-07 59.3 64 45.3
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.4e-07 59.3 68 48.5
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 1.4e-07 59.3 64 43.8
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 1.8e-07 58.9 63 46.0
CARHR133600 Cardamine hirsuta HOM05D001004 ORTHO05D000653 1.8e-07 58.9 64 46.9
HanXRQChr01g0007291 Helianthus annuus HOM05D001004 ORTHO05D000653 1.8e-07 58.9 65 47.7
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 1.8e-07 58.9 62 48.4
Hma1.2p1_0650F.1_g195540 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.8e-07 58.9 64 48.4
MBI04_g22607_MAGBIO Magnolia biondii HOM05D001004 ORTHO05D000653 1.8e-07 58.9 71 45.1
Manes.05G086336 Manihot esculenta HOM05D001004 ORTHO05D000653 1.8e-07 58.9 62 46.8
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 1.8e-07 58.9 65 46.2
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 1.8e-07 58.9 71 46.5
GSVIVG01018137001 Vitis vinifera HOM05D001004 ORTHO05D000653 1.8e-07 58.9 72 50.0
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 1.8e-07 58.9 64 46.9
C03p25690 Brassica napus HOM05D001004 ORTHO05D000653 2.4e-07 58.5 64 46.9
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.4e-07 58.5 65 43.1
HanXRQChr01g0007351 Helianthus annuus HOM05D001004 ORTHO05D000653 2.4e-07 58.5 65 47.7
Manes.05G086324 Manihot esculenta HOM05D001004 ORTHO05D000653 2.4e-07 58.5 64 50.0
Manes.05G086346 Manihot esculenta HOM05D001004 ORTHO05D000653 2.4e-07 58.5 64 43.8
BcaB07g30343 Brassica carinata HOM05D001004 ORTHO05D000653 3.1e-07 58.2 64 46.9
BraA04t18431Z Brassica rapa HOM05D001004 ORTHO05D000653 3.1e-07 58.2 64 46.9
Carub.0004s2089 Capsella rubella HOM05D001004 ORTHO05D000653 3.1e-07 58.2 64 46.9
Lj5g0018869 Lotus japonicus HOM05D001004 ORTHO05D000653 3.1e-07 58.2 64 45.3
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.1e-07 58.2 64 51.6
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 3.1e-07 58.2 64 48.4
arahy.Tifrunner.gnm1.ann1.AUM5GA Arachis hypogaea HOM05D001004 ORTHO05D000653 4.0e-07 57.8 71 46.5
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.0e-07 57.8 64 51.6
Atru.chr5.1613 Acer truncatum HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 45.3
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 5.2e-07 57.4 64 46.9
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 5.2e-07 57.4 64 43.8
ClCG07G000780 Citrullus lanatus HOM05D007791 ORTHO05D044567 5.2e-07 57.4 65 50.8
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 5.2e-07 57.4 68 42.6
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 45.3
Manes.05G086373 Manihot esculenta HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 45.3
PGR004G1725 Punica granatum HOM05D001004 ORTHO05D000653 5.2e-07 57.4 65 50.8
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 5.2e-07 57.4 64 48.4
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 5.2e-07 57.4 64 48.4
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 6.8e-07 57.0 65 50.8
AUR62011910 Chenopodium quinoa HOM05D001004 ORTHO05D000653 6.8e-07 57.0 65 49.2
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 6.8e-07 57.0 64 50.0
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 6.8e-07 57.0 66 48.5
Prupe.1G032000 Prunus persica HOM05D001004 ORTHO05D000653 6.8e-07 57.0 71 42.3
PGR004G0546 Punica granatum HOM05D001004 ORTHO05D000653 6.8e-07 57.0 74 44.6
Thecc.05G233000 Theobroma cacao HOM05D001004 ORTHO05D000653 6.8e-07 57.0 64 48.4
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 6.8e-07 57.0 64 46.9
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 6.8e-07 57.0 51 52.9
CAN.G322.28 Capsicum annuum HOM05D011801 ORTHO05D014157 8.9e-07 56.6 65 41.5
Migut.D00398 Erythranthe guttata HOM05D001004 ORTHO05D000653 8.9e-07 56.6 62 45.2
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 8.9e-07 56.6 68 42.6
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 8.9e-07 56.6 68 42.6
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 8.9e-07 56.6 65 44.6
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 8.9e-07 56.6 71 38.0
AL4G36210 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 48.4
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 43.8
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 45.3
C04p66930 Brassica napus HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 45.3
BolC4t28194H Brassica oleracea HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 45.3
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.2e-06 56.2 66 43.9
COL.COLO4_12161 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.2e-06 56.2 73 45.2
CsaV3_5G014630 Cucumis sativus L. HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 48.4
HanXRQChr01g0005401 Helianthus annuus HOM05D001004 ORTHO05D000653 1.2e-06 56.2 67 44.8
PGR102G1734 Punica granatum HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 45.3
FvH4_4g02870 Fragaria vesca HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 43.8
PGR004G0313 Punica granatum HOM05D001004 ORTHO05D000653 1.5e-06 55.8 65 50.8
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 1.5e-06 55.8 64 48.4
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 2.0e-06 55.5 63 47.6
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 2.0e-06 55.5 64 46.9
FAN12G4135 Fragaria x ananassa HOM05D001004 ORTHO05D000653 2.0e-06 55.5 63 42.9
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 45.3
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 46.9
ECA238G0152 Erigeron canadensis HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 45.3
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 43.8
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 2.6e-06 55.1 64 46.9
A04p29640 Brassica napus HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 43.8
BraA04t18430Z Brassica rapa HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 43.8
AUR62032226 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.4e-06 54.7 62 43.5
CsaV3_3G012470 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.4e-06 54.7 62 43.5
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 3.4e-06 54.7 64 45.3
Manes.15G037300 Manihot esculenta HOM05D001004 ORTHO05D000653 3.4e-06 54.7 71 38.0
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 3.4e-06 54.7 61 41.0
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.4e-06 54.7 68 45.6
Sopen09g032430 Solanum pennellii HOM05D001004 ORTHO05D000653 3.4e-06 54.7 65 44.6
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 3.4e-06 54.7 64 43.8
TPR.G31260 Trifolium pratense HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 43.8
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 3.4e-06 54.7 64 43.8
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 4.4e-06 54.3 64 43.8
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 4.4e-06 54.3 64 43.8
arahy.Tifrunner.gnm1.ann1.T5EZBY Arachis hypogaea HOM05D001004 ORTHO05D000653 4.4e-06 54.3 71 39.4
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 4.4e-06 54.3 66 42.4
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 4.4e-06 54.3 64 45.3
Peaxi162Scf00003g00174 Petunia axillaris HOM05D011801 ORTHO05D014157 4.4e-06 54.3 65 40.0
PGR004G0366 Punica granatum HOM05D001004 ORTHO05D000653 4.4e-06 54.3 75 42.7
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.4e-06 54.3 67 43.3
SalBow6G4960 Salvia bowleyana HOM05D001004 ORTHO05D000653 4.4e-06 54.3 64 43.8
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 5.8e-06 53.9 64 43.8
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 5.8e-06 53.9 71 39.4
ClCG07G000750 Citrullus lanatus HOM05D001004 ORTHO05D000653 5.8e-06 53.9 64 45.3
Ciclev10006306m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.8e-06 53.9 71 45.1
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 43.8
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 43.8
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 43.8
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.8e-06 53.9 64 43.8
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 5.8e-06 53.9 65 47.7
TWI09G1179 Tripterygium wilfordii HOM05D001004 ORTHO05D000653 5.8e-06 53.9 67 40.3
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 5.8e-06 53.9 51 52.9
arahy.Tifrunner.gnm1.ann1.KV3BZC Arachis hypogaea HOM05D001004 ORTHO05D000653 7.6e-06 53.5 71 39.4
Cc03_g04980 Coffea canephora HOM05D001004 ORTHO05D000653 7.6e-06 53.5 65 46.2
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 7.6e-06 53.5 68 42.6
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 7.6e-06 53.5 71 42.3
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 7.6e-06 53.5 64 43.8
Gohir.A11G128400 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.6e-06 53.5 68 41.2
Manes.05G086337 Manihot esculenta HOM05D001004 ORTHO05D000653 7.6e-06 53.5 62 45.2
Manes.05G086462 Manihot esculenta HOM05D001004 ORTHO05D000653 7.6e-06 53.5 64 40.6
Nitab4.5_0002462g0020 Nicotiana tabacum HOM05D011801 ORTHO05D014157 7.6e-06 53.5 64 43.8
Potri.016G079050 Populus trichocarpa HOM05D001004 ORTHO05D000653 7.6e-06 53.5 71 39.4
Sabra16G0086800 Salix brachista HOM05D001004 ORTHO05D000653 7.6e-06 53.5 71 40.8
SEGI_07667 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 7.6e-06 53.5 69 44.9
Solyc09g089530.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 7.6e-06 53.5 69 40.6
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 7.6e-06 53.5 64 43.8
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.9e-06 53.1 66 42.4
COL.COLO4_05582 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.9e-06 53.1 55 45.5
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 9.9e-06 53.1 65 44.6
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 9.9e-06 53.1 64 42.2
HanXRQChr01g0007281 Helianthus annuus HOM05D001004 ORTHO05D000653 9.9e-06 53.1 52 51.9
Manes.01G200000 Manihot esculenta HOM05D000077 ORTHO05D000552 9.9e-06 53.1 64 43.8
PSO339G3429 Papaver somniferum HOM05D001004 ORTHO05D000653 9.9e-06 53.1 62 41.9
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 43.8
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 43.8
SalBow6G7260 Salvia bowleyana HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 45.3
Sed0019846 Sechium edule HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 45.3
Sopen01g050610 Solanum pennellii HOM05D011801 ORTHO05D014157 9.9e-06 53.1 69 36.2
TPR.G6174 Trifolium pratense HOM05D001004 ORTHO05D000653 9.9e-06 53.1 64 43.8
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 9.9e-06 53.1 66 45.5


User provided reference genes

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