Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.3e-85 319.7 166 100.0
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.2e-63 245.4 164 75.0
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 7.8e-62 240.7 164 74.4
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 5.6e-60 234.6 157 73.9
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.3e-45 186.0 159 59.7
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 3.3e-44 182.2 162 57.4
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 9.6e-44 180.6 169 56.2
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.3e-43 180.3 164 55.5
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 2.8e-43 179.1 155 54.8
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 2.8e-43 179.1 154 55.8
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 1.4e-42 176.8 164 54.3
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 3.1e-42 175.6 163 55.2
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.3e-42 174.9 166 51.8
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 9.0e-42 174.1 160 55.0
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.2e-41 173.7 163 53.4
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 5.8e-41 171.4 161 54.7
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.3e-40 170.2 160 53.8
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.7e-40 169.9 165 52.1
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 8.4e-40 167.5 160 53.1
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 3.2e-39 165.6 154 52.6
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.6e-38 163.3 154 51.9
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.6e-38 163.3 162 53.1
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.1e-38 162.9 154 53.9
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.7e-38 162.5 154 51.9
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 3.5e-38 162.2 161 50.3
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.0e-37 160.6 154 53.9
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.1e-35 152.9 156 50.0
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 2.8e-35 152.5 152 51.3
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.8e-35 152.5 156 50.6
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 6.2e-35 151.4 139 51.1
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.8e-34 149.8 164 50.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 3.1e-34 149.1 141 52.5
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 5.3e-34 148.3 163 47.2
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 7.6e-33 144.4 160 48.8
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 2.2e-32 142.9 155 49.7
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 2.9e-32 142.5 159 45.3
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.8e-32 142.1 152 49.3
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.9e-32 141.7 163 46.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 8.4e-32 141.0 157 47.8
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 2.5e-31 139.4 165 44.2
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 3.2e-31 139.0 164 46.3
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.2e-31 139.0 163 47.2
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 3.2e-31 139.0 155 49.7
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 3.2e-31 139.0 151 48.3
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.1e-31 137.9 164 46.3
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 9.3e-31 137.5 153 50.3
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 1.2e-30 137.1 150 46.0
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.2e-30 137.1 153 47.7
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.6e-30 136.7 157 46.5
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 2.1e-30 136.3 162 47.5
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 2.1e-30 136.3 158 46.2
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.1e-30 136.3 167 44.3
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 4.6e-30 135.2 153 47.1
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.3e-29 133.7 164 45.1
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 2.3e-29 132.9 160 40.6
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.0e-29 132.5 163 44.8
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.0e-29 132.5 157 47.1
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 3.9e-29 132.1 167 44.3
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.1e-29 131.7 164 44.5
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 5.1e-29 131.7 164 44.5
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 6.7e-29 131.3 155 44.5
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 8.7e-29 131.0 158 45.6
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 8.7e-29 131.0 145 50.3
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.1e-28 130.6 163 45.4
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.5e-28 130.2 154 47.4
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 1.5e-28 130.2 144 46.5
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.9e-28 129.8 145 46.9
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.9e-28 129.8 160 40.0
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.3e-28 128.6 165 45.5
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.3e-28 128.6 159 44.0
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 4.3e-28 128.6 144 45.8
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 4.3e-28 128.6 142 46.5
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 5.7e-28 128.3 163 43.6
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.7e-28 128.3 163 43.6
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 9.6e-28 127.5 162 39.5
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 9.6e-28 127.5 162 43.8
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 1.3e-27 127.1 163 41.7
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.3e-27 127.1 160 38.8
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 1.3e-27 127.1 140 47.9
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.6e-27 126.7 150 44.0
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.1e-27 126.3 155 43.9
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.1e-27 126.3 155 43.9
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 2.8e-27 125.9 163 45.4
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 2.8e-27 125.9 163 45.4
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.8e-27 125.9 157 46.5
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 3.7e-27 125.6 156 44.9
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 8.2e-27 124.4 158 42.4
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 8.2e-27 124.4 158 42.4
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.1e-26 124.0 149 47.0
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.1e-26 124.0 155 43.9
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 1.1e-26 124.0 160 45.0
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.8e-26 123.2 160 41.9
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 1.8e-26 123.2 163 40.5
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.8e-26 123.2 110 53.6
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.4e-26 122.9 163 43.6
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 3.1e-26 122.5 156 41.0
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.1e-26 122.5 153 43.8
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 5.3e-26 121.7 153 43.8
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 5.3e-26 121.7 112 53.6
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 5.3e-26 121.7 146 46.6
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 5.3e-26 121.7 153 43.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 9.0e-26 120.9 151 41.1
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-25 120.6 156 40.4
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-25 120.6 156 40.4
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 2.6e-25 119.4 150 42.0
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 2.6e-25 119.4 150 42.0
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 2.6e-25 119.4 150 45.3
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.4e-25 119.0 156 42.9
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 4.5e-25 118.6 158 41.8
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.5e-25 118.6 155 41.9
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 4.5e-25 118.6 154 44.2
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 5.8e-25 118.2 158 41.8
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 5.8e-25 118.2 145 38.6
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 7.6e-25 117.9 154 42.9
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 2.9e-24 115.9 168 39.3
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 2.9e-24 115.9 158 42.4
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 5.0e-24 115.2 144 41.7
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 5.0e-24 115.2 161 40.4
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 8.4e-24 114.4 160 39.4
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.1e-23 114.0 159 40.3
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.1e-23 114.0 162 40.7
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.4e-23 113.6 165 41.2
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.4e-23 113.6 168 41.7
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.9e-23 113.2 156 40.4
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 4.2e-23 112.1 157 41.4
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 4.2e-23 112.1 147 43.5
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 7.1e-23 111.3 168 41.1
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 9.3e-23 110.9 150 40.0
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-22 110.5 157 41.4
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-22 110.5 156 40.4
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 1.6e-22 110.2 164 40.9
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.8e-21 106.7 152 42.8
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 6.7e-21 104.8 132 48.5
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 2.5e-20 102.8 95 50.5
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 3.7e-19 99.0 156 38.5
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.4e-18 97.1 158 36.1
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 4.1e-18 95.5 156 37.8
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 9.0e-18 94.4 156 40.4
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.2e-17 94.0 139 38.1
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.5e-17 93.6 118 44.1
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.0e-16 90.9 97 42.3
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 4.2e-15 85.5 153 34.0
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 4.6e-14 82.0 156 35.3
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 2.3e-13 79.7 128 36.7
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 7.4e-12 74.7 129 35.7
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.8e-11 72.8 150 34.0
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 8.2e-11 71.2 154 33.8
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.8e-10 70.1 158 32.3
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 9.1e-10 67.8 142 28.9
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 9.1e-10 67.8 110 40.0
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 4.5e-09 65.5 92 42.4
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 4.5e-09 65.5 167 30.5
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.0e-08 64.3 146 31.5
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.2e-08 63.2 162 32.1
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 6.5e-08 61.6 135 31.9
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 8.5e-08 61.2 162 33.3
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.5e-07 59.7 150 27.3
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.2e-06 57.4 62 46.8
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 4.7e-06 55.5 143 31.5
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 6.1e-06 55.1 139 28.1


User provided reference genes

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