Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.4e-251 872.5 449 100.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 4.4e-200 701.4 472 78.4
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.0e-193 678.7 472 75.4
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.1e-190 670.2 473 74.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.1e-186 656.0 467 74.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 4.7e-154 548.5 475 61.1
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.7e-148 530.0 470 61.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.9e-147 526.6 463 61.8
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 4.3e-147 525.4 463 62.4
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.6e-146 522.3 468 59.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 4.7e-146 521.9 467 62.1
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.4e-145 520.4 476 60.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.8e-145 520.0 470 60.9
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.4e-145 519.6 470 61.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.1e-145 519.2 465 59.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.1e-145 519.2 463 59.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 5.8e-144 515.0 466 60.7
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-143 513.1 473 60.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 8.4e-143 511.1 473 59.4
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.2e-141 507.3 455 59.1
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 7.8e-141 504.6 472 58.5
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-137 494.2 464 59.5
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-137 494.2 464 59.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 3.1e-137 492.7 467 59.3
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.0e-136 490.0 461 57.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.0e-136 490.0 479 58.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.8e-136 488.4 462 56.7
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.8e-136 488.4 470 56.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 9.9e-136 487.6 475 57.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 9.9e-136 487.6 474 58.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 3.8e-135 485.7 472 58.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 3.8e-135 485.7 471 57.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 8.4e-135 484.6 471 56.1
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.1e-134 484.2 478 57.3
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.1e-134 484.2 424 59.2
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.9e-134 483.4 470 57.2
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.2e-134 482.6 469 56.9
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 4.2e-134 482.3 474 56.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.7e-133 479.6 461 57.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.6e-133 478.8 474 55.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.6e-133 478.8 478 56.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 6.0e-133 478.4 471 57.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 6.7e-132 474.9 465 54.0
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.1e-131 474.2 459 57.5
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 4.3e-131 472.2 467 57.8
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.8e-130 468.8 470 56.2
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.4e-129 466.5 470 54.9
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 6.9e-129 464.9 599 47.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 9.0e-129 464.5 470 54.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.4e-128 462.6 475 54.7
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 3.2e-126 456.1 471 56.1
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.1e-126 454.9 465 53.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.0e-124 451.1 460 55.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.0e-124 449.5 469 53.7
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.0e-124 449.5 477 54.3
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 6.2e-122 441.8 462 53.7
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.7e-119 433.7 498 50.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 4.9e-119 432.2 459 53.8
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.4e-118 430.6 460 53.7
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.1e-118 428.3 459 54.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.5e-117 426.0 471 52.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 7.9e-117 424.9 476 52.9
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.0e-116 424.5 529 49.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.8e-116 423.7 466 51.7
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.3e-116 423.3 476 52.7
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.5e-115 419.9 465 53.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.3e-115 419.5 424 55.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 4.3e-115 419.1 457 53.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 6.9e-113 411.8 431 52.4
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 5.9e-112 408.7 371 56.6
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 8.5e-111 404.8 470 50.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 3.6e-109 399.4 347 60.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.8e-108 397.1 480 50.4
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.1e-107 394.4 456 48.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.7e-106 389.4 475 47.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.8e-106 389.0 489 45.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 8.2e-106 388.3 428 51.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.1e-105 387.9 499 46.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-105 387.1 426 50.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.1e-105 386.3 458 48.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 4.1e-105 386.0 458 48.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-104 384.4 468 50.2
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.6e-104 383.3 458 48.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.5e-104 382.5 525 45.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.9e-104 382.1 457 49.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 7.7e-104 381.7 365 57.5
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 7.7e-104 381.7 451 51.0
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 7.7e-104 381.7 471 46.9
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.8e-103 379.4 471 47.6
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.9e-102 377.1 459 47.1
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.9e-102 377.1 463 47.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.2e-102 376.3 465 48.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.2e-102 375.9 470 47.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 4.2e-102 375.9 470 46.6
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 5.5e-102 375.6 459 47.1
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.2e-102 375.2 472 47.7
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.4e-102 374.8 470 47.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.7e-101 373.2 393 52.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.7e-101 373.2 457 47.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.7e-101 373.2 468 47.9
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.7e-101 373.2 470 45.3
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.0e-100 371.3 472 46.8
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.4e-100 370.9 465 47.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.4e-100 370.9 443 49.2
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.8e-100 370.5 472 46.0
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.3e-100 370.2 458 47.4
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.0e-100 369.8 466 47.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.1e-100 369.0 484 44.6
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.1e-100 369.0 469 46.9
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 6.7e-100 368.6 463 46.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.0e-99 367.1 435 48.7
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.6e-99 366.7 473 45.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.4e-99 365.9 473 45.7
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.4e-99 365.2 469 47.1
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 3.1e-97 359.8 462 48.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-96 357.1 450 46.7
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.3e-95 354.4 279 64.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-94 350.5 472 45.8
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 5.5e-94 349.0 472 45.3
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.6e-93 347.4 470 44.9
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.7e-93 346.7 470 44.3
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 6.1e-93 345.5 372 56.7
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 5.2e-92 342.4 448 46.0
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.4e-89 333.6 307 56.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.0e-89 332.0 411 46.7
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 7.7e-88 328.6 367 46.9
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.8e-87 326.2 438 44.1
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.1e-85 320.5 376 48.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.7e-85 319.3 364 46.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 6.1e-85 318.9 445 45.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.1e-81 306.6 425 43.8
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.7e-80 303.5 417 42.2
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.7e-80 302.0 383 45.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.2e-78 295.4 446 42.8
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.7e-77 293.5 365 47.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.0e-76 291.6 311 52.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.0e-76 291.6 372 47.8
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.7e-75 285.8 365 45.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.8e-74 283.5 366 46.7
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 3.7e-74 283.1 365 50.1
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-73 281.6 250 59.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.6e-72 277.7 449 42.3
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.6e-71 272.3 321 49.2
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-69 267.3 208 66.3
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.6e-67 260.4 311 46.6
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.5e-67 258.8 311 46.6
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 7.8e-64 248.8 422 39.6
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 7.5e-59 232.3 388 38.7
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.3e-58 228.8 303 41.9
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.4e-57 228.0 401 39.2
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 7.0e-57 225.7 144 73.6
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-56 224.9 299 42.1
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.0e-55 220.3 388 37.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.1e-54 218.4 313 43.5
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.3e-54 216.9 333 41.7
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.6e-53 213.4 337 37.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-51 208.0 197 54.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.9e-50 203.8 195 57.4
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 2.7e-48 197.2 261 43.7
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 8.6e-47 192.2 299 40.1
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.3e-46 189.9 205 49.3
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.6e-45 188.0 323 35.6
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 8.9e-44 182.2 265 40.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-38 164.1 139 57.6
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.2e-36 156.4 102 70.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.1e-32 144.4 206 43.2
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-29 134.4 209 41.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.6e-24 118.2 76 72.4
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.7e-24 117.5 196 39.3
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.7e-24 117.5 194 38.1
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.6e-24 116.7 106 54.7
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.9e-24 115.9 187 40.1
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.7e-23 114.8 80 66.2
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 5.4e-17 93.2 105 49.5
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 2.7e-16 90.9 137 44.5
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.7e-16 90.9 86 52.3
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 2.3e-15 87.8 61 65.6
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 7.1e-09 66.2 52 55.8


User provided reference genes

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