Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 1.2e-122 443.4 248 100.0
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 9.2e-83 310.8 279 67.7
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 8.6e-81 304.3 232 73.7
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.8e-79 299.3 232 72.4
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 5.8e-45 185.3 192 57.3
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.3e-44 184.1 230 50.9
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.3e-44 184.1 218 52.8
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.7e-44 183.7 217 53.0
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.2e-44 183.3 207 52.2
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 3.8e-44 182.6 192 56.2
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 8.4e-44 181.4 193 57.5
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 8.4e-44 181.4 222 51.4
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.9e-43 180.3 222 50.5
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 2.4e-43 179.9 198 55.6
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 7.1e-43 178.3 232 51.7
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.6e-42 177.2 225 50.7
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 1.0e-41 174.5 195 52.8
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.0e-41 172.9 198 52.0
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 3.9e-41 172.6 201 50.2
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 2.5e-40 169.9 222 49.1
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 3.3e-40 169.5 191 51.8
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.3e-39 167.5 224 45.5
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.3e-39 167.5 220 45.9
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 4.8e-39 165.6 226 45.6
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 2.4e-38 163.3 222 48.2
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 4.0e-38 162.5 205 46.3
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.9e-38 161.8 233 44.6
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 6.9e-38 161.8 200 47.5
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 6.9e-38 161.8 208 48.6
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.0e-37 160.2 196 52.6
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 4.5e-37 159.1 187 50.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 5.8e-37 158.7 190 51.6
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 5.8e-37 158.7 164 59.1
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 7.6e-37 158.3 215 47.4
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 7.6e-37 158.3 210 49.5
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 7.6e-37 158.3 224 47.3
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.6e-37 158.3 239 46.4
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 9.9e-37 157.9 222 46.4
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.3e-36 157.5 186 52.2
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.3e-36 157.5 207 45.4
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.7e-36 157.1 216 47.7
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 2.2e-36 156.8 192 48.4
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.2e-36 156.8 209 49.3
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 3.8e-36 156.0 216 46.3
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.8e-36 156.0 187 50.3
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 4.9e-36 155.6 201 45.3
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 6.4e-36 155.2 220 46.4
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 6.4e-36 155.2 187 50.3
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 6.4e-36 155.2 194 47.4
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 6.4e-36 155.2 217 45.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 8.4e-36 154.8 196 45.9
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 1.1e-35 154.5 215 47.4
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.1e-35 154.5 235 46.0
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.4e-35 154.1 198 48.5
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.4e-35 154.1 226 43.4
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.4e-35 154.1 195 50.8
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.5e-35 153.3 221 46.6
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.5e-35 153.3 200 44.5
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 3.2e-35 152.9 214 48.1
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 3.2e-35 152.9 190 47.9
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 4.2e-35 152.5 193 52.3
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 4.2e-35 152.5 210 43.8
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 4.2e-35 152.5 223 43.9
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 5.5e-35 152.1 194 46.9
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 9.3e-35 151.4 225 44.4
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 9.3e-35 151.4 225 44.4
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.3e-35 151.4 196 46.4
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.3e-35 151.4 196 46.4
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.6e-34 150.6 231 41.6
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.6e-34 150.6 193 51.8
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.1e-34 150.2 214 45.3
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 2.7e-34 149.8 220 46.4
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 4.6e-34 149.1 169 58.0
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 4.6e-34 149.1 193 47.7
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 6.0e-34 148.7 193 46.1
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 7.9e-34 148.3 221 46.2
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.0e-33 147.9 213 46.0
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.0e-33 147.9 189 49.2
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.3e-33 147.5 227 44.1
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.3e-33 147.5 203 43.8
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.3e-33 147.5 193 51.3
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.3e-33 147.5 225 41.8
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.8e-33 147.1 195 48.2
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.7e-33 144.8 193 51.3
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.5e-32 144.1 213 46.0
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.9e-32 143.7 227 47.1
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.9e-32 143.7 221 43.4
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.9e-32 143.7 193 50.8
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.5e-32 143.3 189 48.1
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 3.3e-32 142.9 232 41.8
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.3e-32 142.9 191 46.6
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 4.3e-32 142.5 192 50.0
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 7.4e-32 141.7 199 46.7
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 9.6e-32 141.4 192 47.9
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.1e-31 140.2 207 43.0
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 8.2e-31 138.3 201 44.3
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.1e-30 137.9 240 41.7
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 5.3e-30 135.6 217 41.9
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.3e-30 135.6 188 44.1
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 9.0e-30 134.8 189 46.0
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.2e-29 134.4 266 38.7
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 3.4e-29 132.9 182 48.4
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 1.0e-28 131.3 168 48.2
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.7e-28 130.6 194 40.7
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 2.2e-28 130.2 199 45.2
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.2e-26 124.4 190 44.7
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.7e-26 123.2 188 41.0
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 4.6e-26 122.5 223 42.6
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.3e-25 120.2 235 37.4
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 7.2e-19 98.6 202 34.7
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 6.1e-18 95.5 122 46.7
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 3.0e-17 93.2 119 45.4
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 3.1e-14 83.2 122 44.3
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 6.9e-14 82.0 281 29.9
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 9.1e-14 81.6 73 57.5
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 2.0e-13 80.5 214 33.6
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.3e-12 77.8 121 44.6
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 8.5e-12 75.1 210 32.9
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.1e-11 74.7 91 48.4
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.0e-09 66.6 209 31.1
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.3e-08 63.2 59 57.6
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.3e-08 63.2 148 32.4
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 5.3e-06 55.8 40 65.0


User provided reference genes

Program Settings