Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 3.1e-66 255.0 128 100.0
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 3.7e-59 231.5 128 90.6
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 1.8e-58 229.2 128 88.3
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 3.1e-58 228.4 127 89.0
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 4.0e-58 228.0 119 94.1
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 9.0e-58 226.9 127 88.2
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.4e-57 224.9 127 87.4
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 4.5e-57 224.6 127 87.4
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 5.8e-57 224.2 127 87.4
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 5.8e-57 224.2 127 85.8
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 5.8e-57 224.2 127 86.6
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 7.6e-57 223.8 127 86.6
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.3e-56 223.0 127 85.0
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 85.8
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 85.8
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 2.9e-56 221.9 127 85.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.9e-56 221.9 127 86.6
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 82.7
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 85.8
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 4.9e-56 221.1 126 84.9
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 4.9e-56 221.1 124 86.3
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 84.3
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 84.3
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 2.5e-55 218.8 127 83.5
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 83.5
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 5.5e-55 217.6 127 84.3
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 9.3e-55 216.9 127 82.7
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 1.2e-54 216.5 119 90.8
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 1.2e-54 216.5 127 83.5
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.2e-54 216.5 127 83.5
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.6e-54 216.1 127 83.5
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.6e-54 216.1 127 83.5
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 2.7e-54 215.3 127 84.3
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 2.7e-54 215.3 127 83.5
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 4.6e-54 214.5 127 82.7
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 6.0e-54 214.2 127 82.7
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 6.0e-54 214.2 127 82.7
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 82.7
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 81.9
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 81.9
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.3e-53 212.2 119 87.4
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 3.0e-53 211.8 127 80.3
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 8.7e-53 210.3 127 80.3
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 8.7e-53 210.3 127 79.5
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.5e-52 209.5 127 79.5
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 1.5e-52 209.5 127 79.5
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.5e-52 209.5 127 79.5
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 1.5e-52 209.5 128 78.1
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 1.9e-52 209.1 127 78.7
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 1.9e-52 209.1 127 78.7
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 1.9e-52 209.1 127 78.7
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.9e-52 209.1 120 85.0
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 2.5e-52 208.8 119 85.7
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 78.7
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 81.1
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 78.7
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.3e-52 208.4 127 80.3
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.3e-52 208.0 121 82.6
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.3e-52 208.0 119 85.7
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-52 207.6 119 82.4
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 5.7e-52 207.6 119 85.7
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 81.1
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.3e-51 206.5 128 77.3
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 77.2
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 122 80.3
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 3.7e-51 204.9 128 77.3
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 119 82.4
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 3.7e-51 204.9 119 82.4
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 4.8e-51 204.5 128 77.3
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.8e-51 204.5 117 82.9
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 4.8e-51 204.5 128 77.3
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 4.8e-51 204.5 119 80.7
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 6.2e-51 204.1 127 78.7
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 6.2e-51 204.1 127 78.0
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 81.5
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.4e-50 203.0 113 85.8
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 78.0
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 74.8
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.8e-50 202.6 127 76.4
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 3.1e-50 201.8 127 77.2
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 80.7
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 77.2
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 78.0
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 127 78.0
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 82.4
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 5.3e-50 201.1 128 76.6
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.3e-50 201.1 127 75.6
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 9.0e-50 200.3 127 78.0
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 80.7
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 1.2e-49 199.9 127 76.4
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 81.5
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.6e-49 198.7 128 75.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 3.4e-49 198.4 121 78.5
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 3.4e-49 198.4 121 78.5
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 3.4e-49 198.4 128 77.3
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 5.8e-49 197.6 127 76.4
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 80.7
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.3e-48 196.4 127 73.2
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 77.3
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 3.8e-48 194.9 148 69.6
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 2.5e-47 192.2 127 74.0
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 4.2e-47 191.4 119 78.2
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.7e-46 188.7 119 78.2
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.7e-46 188.7 144 65.3
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 4.6e-46 188.0 119 73.9
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 7.9e-46 187.2 126 75.4
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.3e-45 186.4 116 75.0
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.8e-45 186.0 127 71.7
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.8e-45 186.0 119 73.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 2.3e-45 185.7 127 71.7
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 2.3e-45 185.7 119 74.8
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 3.9e-45 184.9 126 73.8
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.8e-43 177.9 105 80.0
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-42 176.4 122 69.7
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.4e-42 176.4 105 81.0
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.4e-42 175.6 130 70.8
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.1e-42 175.3 103 80.6
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.1e-42 175.3 130 69.2
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.0e-42 173.7 121 70.2
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 3.8e-40 168.3 133 69.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-38 162.9 107 75.7
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.0e-37 160.2 94 80.9
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.0e-37 158.7 93 80.6
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.1e-37 157.9 94 79.8
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 4.1e-34 148.3 97 75.3
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 4.1e-34 148.3 115 59.1
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 5.3e-34 147.9 129 57.4
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.0e-33 146.0 100 74.0
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 9.4e-31 137.1 141 51.1
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.1e-28 130.2 92 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 2.0e-28 129.4 99 56.6
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.0e-28 129.4 85 72.9
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 2.6e-28 129.0 119 52.9
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 5.7e-28 127.9 139 47.5
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.2e-15 85.1 51 80.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.5e-08 61.2 39 69.2
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 9.4e-07 57.4 32 81.2
Sed0016125 Sechium edule HOM05D005344 ORTHO05D006444 1.2e-06 57.0 31 80.6
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.7e-06 55.8 33 78.8
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 2.7e-06 55.8 50 50.0


User provided reference genes

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