Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 7.0e-255 884.0 658 100.0
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 4.6e-222 775.0 662 92.1
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 3.3e-164 582.8 666 77.8
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 4.7e-126 456.1 482 82.0
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.3e-115 421.4 672 66.7
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 4.1e-106 389.8 660 57.4
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.6e-105 386.3 660 53.5
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.3e-104 384.8 634 62.8
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 3.3e-95 353.6 605 55.5
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 5.6e-87 326.2 662 60.9
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 7.3e-87 325.9 662 59.1
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 2.1e-86 324.3 634 62.8
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 1.4e-82 311.6 620 58.1
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 1.9e-82 311.2 475 62.3
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 1.9e-82 311.2 451 73.4
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 2.7e-81 307.4 450 73.8
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 3.0e-80 303.9 653 55.9
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.6e-78 298.1 661 54.5
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 7.6e-76 289.3 610 63.0
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 9.9e-76 288.9 659 56.4
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 3.8e-75 287.0 668 53.1
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 1.4e-74 285.0 598 56.7
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.2e-73 282.0 616 58.0
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 1.6e-70 271.6 595 53.6
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.4e-69 267.7 558 55.9
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 2.4e-69 267.7 650 47.1
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 2.0e-68 264.6 365 80.8
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 9.9e-68 262.3 447 57.0
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 9.9e-68 262.3 648 53.1
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 5.5e-66 256.5 442 62.0
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 9.3e-66 255.8 603 48.9
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 1.6e-65 255.0 620 53.2
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 2.7e-65 254.2 442 61.3
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 2.7e-65 254.2 400 65.0
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 7.9e-65 252.7 474 54.6
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 7.9e-65 252.7 616 57.0
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 3.9e-64 250.4 442 48.0
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.3e-63 247.3 609 54.2
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.4e-61 241.1 409 62.6
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 3.1e-61 240.7 449 62.1
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.1e-61 240.7 583 54.0
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.1e-61 240.7 612 47.7
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 9.0e-61 239.2 471 63.1
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 1.2e-60 238.8 425 65.4
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 3.4e-60 237.3 434 63.4
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.3e-59 235.3 471 64.5
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 2.9e-59 234.2 435 60.7
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 3.8e-59 233.8 652 51.2
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 8.4e-59 232.6 416 59.9
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 1.2e-57 228.8 224 54.0
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 3.0e-56 224.2 614 53.9
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 3.3e-55 220.7 613 45.7
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.4e-53 215.3 383 67.4
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 5.3e-53 213.4 566 55.1
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 3.4e-52 210.7 215 49.8
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 7.6e-52 209.5 634 48.9
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 8.5e-51 206.1 569 50.6
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.9e-50 204.9 568 51.9
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 7.2e-50 203.0 160 63.1
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 4.6e-49 200.3 519 52.2
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 3.0e-48 197.6 598 47.3
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 1.3e-46 192.2 592 45.8
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 6.3e-46 189.9 506 50.0
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 1.4e-45 188.7 213 46.5
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 9.1e-45 186.0 606 36.8
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 2.5e-42 177.9 656 38.4
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 9.4e-42 176.0 228 41.2
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 1.2e-41 175.6 536 49.1
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 2.6e-39 167.9 382 64.7
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 3.3e-39 167.5 532 37.4
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 4.4e-39 167.2 170 48.2
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 1.8e-37 161.8 529 45.2
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.2e-36 159.1 584 28.4
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 5.0e-35 153.7 246 42.7
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 2.5e-34 151.4 388 49.2
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 1.6e-33 148.7 521 28.6
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 2.7e-33 147.9 586 24.7
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 7.9e-33 146.4 585 27.7
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 7.9e-33 146.4 585 27.7
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 1.0e-32 146.0 389 54.0
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 3.0e-32 144.4 535 46.0
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 1.5e-31 142.1 591 23.4
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.0e-31 141.7 107 61.7
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 5.7e-31 140.2 244 34.8
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 8.2e-30 136.3 591 23.2
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.1e-29 134.0 590 36.4
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 8.5e-27 126.3 590 35.4
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 4.7e-25 120.6 293 44.4
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 5.7e-23 113.6 237 49.8
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.8e-21 108.6 143 41.3
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 8.8e-16 89.7 292 27.4
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 8.3e-14 83.2 240 45.4
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.7e-11 75.5 64 50.0
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.0e-08 66.2 86 44.2
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 4.4e-07 60.8 110 30.0
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 7.5e-07 60.1 156 26.3
Sed0021022 Sechium edule HOM05D005973 ORTHO05D007285 1.3e-06 59.3 138 26.1
ClCG01G007570 Citrullus lanatus HOM05D005973 ORTHO05D007285 2.2e-06 58.5 116 27.6
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 2.2e-06 58.5 132 26.5
SGA_v2.0_scaffold165G38283 Striga asiatica HOM05D000424 ORTHO05D000355 2.2e-06 58.5 200 25.5
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 4.9e-06 57.4 155 25.2
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 6.3e-06 57.0 141 24.8
Dinv44566 Davidia involucrata HOM05D000424 ORTHO05D000355 8.3e-06 56.6 156 25.6
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 8.3e-06 56.6 155 27.7


User provided reference genes

Program Settings