Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 5.5e-281 970.7 644 100.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 9.8e-145 518.1 690 53.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.2e-135 486.5 691 53.8
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 7.1e-135 485.3 685 51.7
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 6.2e-99 365.9 951 41.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 6.3e-75 286.2 271 64.9
Sed0016406 Sechium edule HOM05D013728 ORTHO05D003557 1.2e-36 159.1 310 43.9
ClCG01G022640 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.2e-35 154.8 363 41.9
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.6e-30 138.7 247 46.2
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.4e-26 123.6 344 33.7
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.0e-24 119.4 251 39.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.0e-24 117.9 252 40.5
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 5.1e-24 117.1 221 42.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.6e-23 113.6 253 39.9
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 7.3e-23 113.2 252 39.7
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.2e-22 112.5 315 37.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.8e-22 111.3 244 38.9
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 3.6e-22 110.9 460 29.6
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.7e-22 110.5 225 40.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 8.1e-22 109.8 231 40.3
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.8e-21 108.6 246 39.8
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.1e-21 107.8 226 41.2
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 5.2e-21 107.1 370 31.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.5e-20 105.5 213 43.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.0e-20 105.1 253 37.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.4e-20 104.4 247 38.1
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 9.9e-20 102.8 257 36.2
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 8.4e-19 99.8 696 26.1
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.4e-18 98.2 257 35.4
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.4e-18 98.2 369 30.1
Sed0014700 Sechium edule HOM05D013728 ORTHO05D003557 3.2e-18 97.8 132 52.3
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.2e-18 97.8 236 38.6
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 5.4e-18 97.1 242 36.8
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.2e-17 95.9 356 31.2
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.7e-17 94.7 353 30.6
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.0e-17 93.6 231 39.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 6.0e-17 93.6 712 30.2
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.0e-16 92.8 358 31.6
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.3e-16 92.4 214 40.7
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-16 92.4 355 29.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.3e-16 92.4 252 36.5
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.7e-16 92.0 248 35.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.7e-16 92.0 244 35.7
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.7e-16 92.0 252 36.1
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.3e-16 91.7 107 58.9
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.9e-16 90.9 263 34.6
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.9e-16 90.9 347 29.1
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 5.1e-16 90.5 730 25.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 8.6e-16 89.7 297 34.7
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.1e-15 89.4 343 29.4
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.5e-15 88.2 261 34.9
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 3.3e-15 87.8 350 28.6
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 4.3e-15 87.4 264 37.1
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.3e-15 87.4 358 29.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 7.3e-15 86.7 372 31.2
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 7.3e-15 86.7 372 31.2
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.3e-15 86.7 241 35.3
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 9.6e-15 86.3 102 55.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 9.6e-15 86.3 304 30.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.2e-14 85.9 127 49.6
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.2e-14 85.9 312 32.4
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.6e-14 85.5 245 34.3
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.1e-14 85.1 78 62.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.1e-14 85.1 335 31.0
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.8e-14 84.7 205 39.5
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.6e-14 84.3 361 30.7
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 3.6e-14 84.3 317 30.6
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 3.6e-14 84.3 316 32.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.6e-14 84.3 740 25.1
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 4.7e-14 84.0 211 38.4
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.2e-14 83.6 363 28.4
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 8.1e-14 83.2 248 32.3
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.1e-13 82.8 253 34.8
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.1e-13 82.8 692 27.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-13 82.4 238 34.5
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.4e-13 82.4 361 28.5
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.4e-13 82.4 91 52.7
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.8e-13 82.0 106 48.1
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-13 82.0 357 31.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.8e-13 82.0 357 31.7
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.4e-13 81.6 103 56.3
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.4e-13 81.6 359 31.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.4e-13 81.6 352 31.8
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 4.0e-13 80.9 706 29.3
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.0e-13 80.9 359 31.2
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.8e-13 80.1 210 35.7
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 6.8e-13 80.1 367 30.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 8.9e-13 79.7 349 28.1
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 8.9e-13 79.7 91 53.8
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.2e-12 79.3 693 25.4
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.2e-12 79.3 366 30.9
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.5e-12 79.0 355 31.3
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.5e-12 79.0 367 30.2
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 5.8e-12 77.0 346 27.5
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 5.8e-12 77.0 337 32.0
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 5.8e-12 77.0 320 30.0
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 7.6e-12 76.6 194 35.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 7.6e-12 76.6 194 35.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 7.6e-12 76.6 123 40.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 9.9e-12 76.3 262 30.9
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 9.9e-12 76.3 334 27.8
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 9.9e-12 76.3 282 33.0
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 9.9e-12 76.3 742 25.7
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.7e-11 75.5 325 31.4
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 2.9e-11 74.7 210 36.2
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 2.9e-11 74.7 784 24.2
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.8e-11 74.3 227 33.9
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 4.9e-11 73.9 162 34.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.4e-11 73.6 109 42.2
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.4e-11 73.6 109 41.3
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 6.4e-11 73.6 392 27.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 8.4e-11 73.2 682 24.3
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.9e-10 72.0 118 40.7
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.4e-10 71.6 345 29.9
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.2e-10 71.2 739 26.1
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.2e-10 70.9 351 26.5
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 5.4e-10 70.5 244 31.1
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.4e-10 70.5 175 34.9
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 7.1e-10 70.1 683 27.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 9.3e-10 69.7 308 30.2
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.7e-09 68.2 76 52.6
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 3.5e-09 67.8 670 23.0
ClCG04G001820 Citrullus lanatus HOM05D013728 ORTHO05D003557 4.6e-09 67.4 93 54.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 4.6e-09 67.4 208 34.1
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 6.0e-09 67.0 242 31.8
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.0e-09 67.0 672 24.0
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.8e-09 66.6 339 27.1
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.0e-08 66.2 58 58.6
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.0e-08 66.2 120 41.7
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.0e-08 66.2 87 43.7
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-08 65.9 670 22.7
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-08 65.9 719 21.7
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 1.3e-08 65.9 66 56.1
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.3e-08 65.1 72 50.0
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 5.1e-08 63.9 371 25.9
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.1e-07 62.8 45 68.9
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 1.1e-07 62.8 33 90.9
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.5e-07 62.4 357 26.3
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.5e-07 62.4 44 65.9
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.9e-07 62.0 319 30.7
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 3.3e-07 61.2 99 45.5
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 5.6e-07 60.5 39 74.4
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 7.3e-07 60.1 656 25.2
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 7.3e-07 60.1 379 26.9
ClCG06G018410 Citrullus lanatus HOM05D013728 ORTHO05D003557 9.6e-07 59.7 72 55.6
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 2.8e-06 58.2 104 43.3
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 3.6e-06 57.8 36 80.6


User provided reference genes

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