Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 0.0e+00 1372.5 712 100.0
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 5.5e-173 612.1 802 51.2
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 6.2e-124 449.1 632 47.3
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 9.0e-123 445.3 652 47.7
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 2.4e-75 287.7 921 30.2
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.5e-72 276.6 832 30.6
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 3.7e-68 263.8 751 33.3
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 4.1e-67 260.4 659 31.7
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 7.0e-67 259.6 684 33.2
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 8.8e-62 242.7 621 32.9
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 8.8e-62 242.7 882 27.8
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.5e-61 241.9 671 31.1
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.4e-59 234.6 693 30.3
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 3.1e-59 234.2 890 28.4
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.6e-58 231.9 712 29.6
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 2.0e-58 231.5 882 28.5
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 2.7e-58 231.1 929 26.9
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 4.5e-58 230.3 574 33.8
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 7.7e-58 229.6 722 29.4
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 1.0e-57 229.2 587 32.2
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 1.3e-57 228.8 632 30.5
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 2.9e-57 227.6 629 31.8
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 5.0e-57 226.9 304 46.4
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 3.2e-56 224.2 643 31.4
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 3.6e-55 220.7 273 49.1
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 3.6e-55 220.7 586 32.8
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 4.7e-55 220.3 598 31.6
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.8e-54 218.4 567 33.7
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 3.0e-54 217.6 646 31.3
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 1.5e-53 215.3 577 31.0
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 7.5e-53 213.0 601 32.4
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 8.3e-52 209.5 573 32.3
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 2.4e-51 208.0 578 32.0
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 7.0e-51 206.5 626 30.8
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 7.0e-51 206.5 278 44.6
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.6e-50 205.3 894 25.5
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 1.6e-50 205.3 564 31.6
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 4.5e-50 203.8 838 27.4
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 7.7e-50 203.0 566 33.0
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 1.3e-49 202.2 897 25.5
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.7e-49 201.8 544 31.6
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 2.8e-47 194.5 685 28.3
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 3.0e-46 191.0 724 28.5
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.4e-45 187.2 404 37.9
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 4.4e-45 187.2 719 29.1
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 5.7e-45 186.8 753 27.8
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.4e-43 181.4 702 27.8
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 3.2e-43 181.0 760 26.1
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 4.1e-43 180.6 817 26.2
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 1.2e-42 179.1 248 44.8
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 1.2e-42 179.1 586 29.2
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 7.8e-42 176.4 280 39.6
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 1.0e-41 176.0 255 43.1
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 1.0e-41 176.0 247 44.5
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-41 174.9 346 38.7
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 2.3e-41 174.9 865 24.7
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.9e-41 174.5 694 28.5
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 5.0e-41 173.7 301 38.5
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 8.6e-41 172.9 375 36.3
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 1.5e-40 172.2 858 24.7
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 2.5e-40 171.4 304 38.2
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 1.6e-39 168.7 434 33.2
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 2.1e-39 168.3 577 29.6
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 4.7e-39 167.2 576 28.8
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 8.0e-39 166.4 366 33.6
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 1.8e-38 165.2 521 31.7
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.2e-37 162.5 249 41.4
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 1.6e-34 152.1 810 25.4
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 2.7e-34 151.4 713 27.6
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.9e-32 145.2 295 35.6
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 3.1e-30 137.9 404 28.5
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 3.2e-27 127.9 304 31.9
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 5.4e-27 127.1 580 25.3
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 7.8e-26 123.2 359 30.9
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 1.9e-24 118.6 786 23.2
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 2.8e-23 114.8 381 30.2
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 4.4e-21 107.5 442 26.5
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 2.9e-20 104.8 209 35.9
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 2.3e-17 95.1 281 31.0
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 5.6e-16 90.5 338 27.2
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 6.2e-15 87.0 243 30.9
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 1.1e-11 76.3 285 26.3
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 7.1e-11 73.6 800 21.2
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 3.9e-09 67.8 282 24.8
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 5.1e-09 67.4 251 25.1


User provided reference genes

Program Settings